##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3548489_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 780292 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.942251105996217 33.0 31.0 34.0 30.0 34.0 2 32.13403700153276 34.0 31.0 34.0 30.0 34.0 3 32.26289260943339 34.0 31.0 34.0 30.0 34.0 4 35.83069415039498 37.0 35.0 37.0 35.0 37.0 5 35.6602861492877 37.0 35.0 37.0 33.0 37.0 6 35.659883735832224 37.0 35.0 37.0 33.0 37.0 7 35.71038790606593 37.0 35.0 37.0 35.0 37.0 8 35.91142162164933 37.0 35.0 37.0 35.0 37.0 9 37.543179989029746 39.0 37.0 39.0 35.0 39.0 10 37.09100951951321 39.0 37.0 39.0 33.0 39.0 11 37.080216124220165 39.0 37.0 39.0 33.0 39.0 12 37.009114536609374 39.0 37.0 39.0 33.0 39.0 13 37.00839301184685 39.0 37.0 39.0 33.0 39.0 14 38.200797906424775 40.0 37.0 41.0 33.0 41.0 15 38.217901759854 40.0 37.0 41.0 33.0 41.0 16 38.12398435457495 40.0 37.0 41.0 33.0 41.0 17 38.11360747002404 40.0 37.0 41.0 33.0 41.0 18 38.03509968063238 40.0 37.0 41.0 33.0 41.0 19 38.02819201017055 40.0 37.0 41.0 33.0 41.0 20 38.0164182126691 40.0 37.0 41.0 33.0 41.0 21 38.018730167680815 40.0 37.0 41.0 33.0 41.0 22 37.99836855946236 40.0 37.0 41.0 33.0 41.0 23 37.89203272621019 40.0 37.0 41.0 33.0 41.0 24 37.79139860462494 40.0 37.0 41.0 33.0 41.0 25 37.80605209331891 40.0 37.0 41.0 33.0 41.0 26 37.736051375638866 40.0 37.0 41.0 33.0 41.0 27 37.65956077981063 40.0 37.0 41.0 33.0 41.0 28 37.63572483121703 40.0 37.0 41.0 33.0 41.0 29 37.50883259087624 40.0 36.0 41.0 32.0 41.0 30 37.49623986917718 40.0 36.0 41.0 32.0 41.0 31 37.42334023673189 40.0 36.0 41.0 32.0 41.0 32 37.38742035033039 40.0 36.0 41.0 32.0 41.0 33 37.35520676874811 40.0 36.0 41.0 32.0 41.0 34 37.239116894700956 39.0 36.0 41.0 31.0 41.0 35 37.19667124614888 39.0 36.0 41.0 31.0 41.0 36 37.15910582192308 39.0 36.0 41.0 31.0 41.0 37 37.03237634116459 39.0 35.0 41.0 31.0 41.0 38 37.017433217308394 39.0 35.0 41.0 31.0 41.0 39 36.957588953878805 39.0 35.0 41.0 31.0 41.0 40 36.85155300836097 39.0 35.0 41.0 31.0 41.0 41 36.82592285964741 39.0 35.0 41.0 31.0 41.0 42 36.75059464918262 39.0 35.0 41.0 31.0 41.0 43 36.70649449180563 39.0 35.0 40.0 31.0 41.0 44 36.61012159550527 39.0 35.0 40.0 31.0 41.0 45 36.425529160878234 39.0 35.0 40.0 30.0 41.0 46 36.25405232912807 38.0 35.0 40.0 30.0 41.0 47 36.1564734740328 38.0 35.0 40.0 29.0 41.0 48 36.14543786172356 38.0 35.0 40.0 30.0 41.0 49 35.99745992525875 38.0 35.0 40.0 29.0 41.0 50 35.83865399107001 38.0 34.0 40.0 29.0 41.0 51 34.66574051765237 37.0 33.0 40.0 26.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 3.0 9 3.0 10 6.0 11 3.0 12 6.0 13 10.0 14 9.0 15 24.0 16 51.0 17 98.0 18 199.0 19 396.0 20 695.0 21 1129.0 22 1642.0 23 2047.0 24 2845.0 25 3599.0 26 4473.0 27 5962.0 28 7515.0 29 9910.0 30 13074.0 31 17146.0 32 23022.0 33 30259.0 34 44815.0 35 56399.0 36 69045.0 37 99424.0 38 161943.0 39 224459.0 40 81.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 20.480794369287395 33.55679668636869 19.328661577973374 26.633747366370535 2 23.549389203016307 31.215365529827295 19.80976352442419 25.42548174273221 3 21.448637176851744 29.43769768240607 22.538998221178737 26.574666919563445 4 22.22385978582377 30.53626078442429 18.61751754471403 28.62236188503791 5 18.55843709790694 34.821066985179904 17.31749140065514 29.303004516258017 6 21.03904692089628 35.18900616692213 21.452610048545928 22.319336863635662 7 84.92935977813434 5.411563876087413 5.268540495096707 4.39053585068154 8 86.39112024729204 3.385783783506687 3.8553515863292205 6.367744382872054 9 79.6333936526326 7.450800469567803 7.889610556048249 5.026195321751344 10 31.087336535553355 38.39178153819339 13.85827356938172 16.66260835687153 11 23.442506138727552 26.946578972999852 30.290327210839017 19.320587677433576 12 25.136615523419437 23.516324657948562 32.491938915175346 18.855120903456655 13 25.678079488191603 25.558124394457458 28.1604835113009 20.603312606050043 14 21.417879460509656 27.04461919384025 30.362607844242923 21.174893501407166 15 19.803740138307198 29.23328702588262 28.21469398635383 22.74827884945636 16 22.01983360075459 27.639140219302515 27.40204948916559 22.9389766907773 17 20.876415495737493 27.207122461847614 28.887262717034133 23.029199325380755 18 21.713025380242268 26.04358368405674 28.66055271616267 23.582838219538328 19 21.586662428936858 28.954545221532452 28.170736083414926 21.288056266115763 20 22.588082410174653 29.137553633767872 27.636705233425435 20.63765872263204 21 23.43789248127624 27.410251546856816 27.042953150871725 22.108902820995215 22 22.34163620798368 26.218646352903786 27.057434908982792 24.382282530129746 23 22.151963623874142 27.50175575297453 26.098434944866796 24.24784567828454 24 19.595997395846684 30.207794005321087 27.68220102218144 22.514007576650794 25 22.049950531339547 27.328359127096007 26.172766092693507 24.448924248870934 26 23.406365822025602 27.483044808866424 25.18851916974671 23.922070199361265 27 20.125799059839135 27.02731797839783 27.844960604491654 25.00192235727138 28 23.551439717439113 25.7220373911305 27.663874549527613 23.062648341902776 29 21.08274850953233 27.525721140291072 26.14136759059429 25.250162759582313 30 24.27988496614088 26.468809112486095 26.49687552864825 22.754430392724775 31 25.14481758111066 27.59723283078642 24.15159965756409 23.106349930538826 32 22.285503375659367 25.92657620480538 25.999113152512138 25.788807267023113 33 24.290522009709186 26.078826900698715 26.474319869997387 23.156331219594716 34 22.148503380785655 26.114070117340688 26.171100049724977 25.566326452148687 35 22.521568848584888 25.60233861169921 29.104232774397275 22.771859765318624 36 22.702142274943228 28.30530109241156 26.83854249434827 22.154014138296947 37 21.491954294033516 28.833693027738335 25.696790432299704 23.977562245928446 38 22.704577260820308 26.89057429782697 28.587118668395934 21.81772977295679 39 20.87603102428322 26.08959210141844 27.625299246948575 25.409077627349763 40 22.539639006935865 26.82008786454302 28.551106508845407 22.089166619675712 41 21.330219968934706 25.667698758926143 30.138460986399963 22.863620285739184 42 22.82619839752298 26.80035166322351 26.793943805652244 23.579506133601267 43 21.29305439502135 24.996539756911513 29.01157515391674 24.698830694150395 44 22.543868192932905 24.4891655944185 27.425245933573585 25.541720279075015 45 24.749965397569117 24.861333962157754 27.963121498105835 22.42557914216729 46 20.953566100895564 24.649362033700204 30.47410456598299 23.92296729942124 47 21.551419212294885 27.36616548676649 27.240571478369635 23.841843822568986 48 21.158617543176145 25.303732448878115 30.068102710267436 23.469547297678307 49 22.043158202314007 25.105217021320225 28.595833354692857 24.25579142167291 50 20.712502499064453 24.57541535732777 28.451784716490753 26.26029742711703 51 21.10594495394032 22.64152394231903 30.96968827054487 25.28284283319578 >>END_MODULE >>Per sequence GC content pass #GC Content Count 0 1055.0 1 882.0 2 709.0 3 497.0 4 285.0 5 286.5 6 288.0 7 290.0 8 292.0 9 364.0 10 436.0 11 527.5 12 619.0 13 634.5 14 650.0 15 714.0 16 778.0 17 897.0 18 1016.0 19 1115.5 20 1215.0 21 1621.0 22 2027.0 23 2166.0 24 2305.0 25 3020.0 26 5684.0 27 7633.0 28 8789.5 29 9946.0 30 11684.0 31 13422.0 32 16541.0 33 19660.0 34 22183.0 35 24706.0 36 26378.5 37 28051.0 38 31172.5 39 34294.0 40 35302.0 41 36310.0 42 38301.0 43 40292.0 44 51880.5 45 63469.0 46 66939.0 47 70409.0 48 72944.5 49 75480.0 50 72839.5 51 70199.0 52 64458.0 53 58717.0 54 52544.5 55 46372.0 56 42043.0 57 37714.0 58 34114.0 59 30514.0 60 27650.0 61 24786.0 62 23224.0 63 21662.0 64 19780.5 65 17899.0 66 14717.5 67 11536.0 68 9619.0 69 7702.0 70 6399.0 71 5096.0 72 4185.5 73 3275.0 74 2708.5 75 1916.5 76 1691.0 77 1272.5 78 854.0 79 754.5 80 655.0 81 449.0 82 243.0 83 172.0 84 101.0 85 62.0 86 23.0 87 17.5 88 12.0 89 8.5 90 5.0 91 5.5 92 6.0 93 5.0 94 4.0 95 2.5 96 1.0 97 1.0 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 780292.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 25.43633740357859 #Duplication Level Percentage of deduplicated Percentage of total 1 74.43906307617836 18.934571244119418 2 10.17149929510407 5.174513759410578 3 3.469153892940007 2.6472770677728055 4 1.7178099958093347 1.7477917859458465 5 0.9629907960400953 1.22474794023083 6 0.7458755902014331 1.1383405904074182 7 0.525316628520604 0.935349170473231 8 0.4385031438852766 0.8923131136316691 9 0.35981596236266467 0.8237160199665068 >10 5.723158383489448 36.10308421070876 >50 1.3302573531017055 22.610508749277397 >100 0.10946117648374869 4.120235688575492 >500 0.004054117647546248 0.7389973470968367 >1k 0.001520294117829843 0.8382521800402458 >5k 0.001520294117829843 2.0703011323429785 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source AATGATACGGCTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGCC 5796 0.7427988496614089 No Hit AATCTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGCCGTCTTCT 5183 0.6642385158376608 No Hit AATGATACCTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGCCGT 5082 0.651294643543699 No Hit CTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGCCGTCTTCTGCT 4132 0.5295453496896034 No Hit AATGACTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGCCGTCTT 1324 0.16968006848718173 No Hit AATGATCTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGCCGTCT 1047 0.13418053754235593 No Hit AACTGTCTCTTATACACATCTGACGCGCAGCTATTCGTATGCCGTCTTCTG 1000 0.12815715142536382 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 819 0.10496070701737298 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.6004162544278295 0.0 2 0.0 0.0 0.0 0.8199494548194778 0.0 3 0.00499812890558919 0.0 0.0 1.166614549425087 0.0 4 0.00499812890558919 0.0 0.0 2.8068979305183186 0.0 5 0.00499812890558919 0.0 0.0 3.026046659455691 0.0 6 0.00499812890558919 0.0 0.0 4.1743347362269505 0.0 7 0.00499812890558919 0.0 0.0 5.003255191646204 0.0 8 0.00499812890558919 0.0 0.0 5.742850112521979 0.0 9 0.00499812890558919 0.0 0.0 7.288297201560441 0.0 10 0.00499812890558919 0.0 0.0 8.656631107329051 0.0 11 0.00499812890558919 0.0 0.0 10.547846190913145 0.0 12 0.00499812890558919 0.0 0.0 11.159796588969257 0.0 13 0.00499812890558919 0.0 0.0 11.446612293859221 0.0 14 0.00499812890558919 0.0 0.0 11.811475703967233 0.0 15 0.00499812890558919 0.0 0.0 12.068815264029363 0.0 16 0.00499812890558919 0.0 0.0 12.584519641365027 0.0 17 0.00499812890558919 0.0 0.0 13.213643097712138 0.0 18 0.00499812890558919 0.0 0.0 14.090494327764478 0.0 19 0.00499812890558919 0.0 0.0 14.463431638412287 0.0 20 0.00499812890558919 0.0 0.0 14.844058378145617 0.0 21 0.00499812890558919 0.0 0.0 15.271462478149205 0.0 22 0.00499812890558919 0.0 0.0 15.751667324540044 0.0 23 0.00499812890558919 0.0 0.0 16.20739415500864 0.0 24 0.00499812890558919 0.0 0.0 16.56315840736545 0.0 25 0.00499812890558919 0.0 0.0 16.86138009873227 0.0 26 0.00499812890558919 0.0 0.0 17.16152414737047 0.0 27 0.00499812890558919 0.0 0.0 17.484223854659536 0.0 28 0.00499812890558919 0.0 0.0 17.803847790314396 0.0 29 0.00499812890558919 0.0 0.0 18.146540013225817 0.0 30 0.00499812890558919 0.0 0.0 18.61969621628826 0.0 31 0.00499812890558919 0.0 0.0 18.93380939443183 0.0 32 0.00499812890558919 0.0 0.0 19.257149887478022 0.0 33 0.00499812890558919 0.0 0.0 19.59330609566675 0.0 34 0.00499812890558919 0.0 0.0 19.919594203195725 0.0 35 0.00499812890558919 0.0 0.0 20.297017014143425 0.0 36 0.00499812890558919 0.0 0.0 20.600749463021536 0.0 37 0.00499812890558919 0.0 0.0 20.918322884253588 0.0 38 0.00499812890558919 0.0 0.0 21.25242857801951 0.0 39 0.00499812890558919 0.0 0.0 21.590763457782472 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GTCTCGC 20 7.031892E-4 45.000004 37 AGGCGTA 20 7.031892E-4 45.000004 38 TAGCCCG 30 2.164601E-6 45.000004 1 ATCCGCG 30 2.164601E-6 45.000004 1 TACGCCG 20 7.031892E-4 45.000004 1 TCTCGAC 20 7.031892E-4 45.000004 45 CCATACG 35 1.211265E-7 45.000004 1 AACGATC 30 2.164601E-6 45.000004 13 CATACCG 20 7.031892E-4 45.000004 1 TATAGCG 20 7.031892E-4 45.000004 1 TCGAGAC 20 7.031892E-4 45.000004 29 CACGTTG 20 7.031892E-4 45.000004 40 CGACTAG 40 6.8102963E-9 45.000004 1 ATACCCG 45 3.8380676E-10 45.000004 1 ACGTTAG 25 3.8896495E-5 45.0 1 ATTACCG 25 3.8896495E-5 45.0 1 TCGGTAG 25 3.8896495E-5 45.0 15 TAGCACG 85 0.0 42.352943 1 CCTAACG 60 3.6379788E-12 41.250004 1 TACGAGT 55 6.002665E-11 40.909092 15 >>END_MODULE