SRR3548487_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548487_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	887888
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCTGTTCGGATCGTATGCCGTCTTCTGCT	4440	0.5000630710179662	Illumina Single End Adapter 1 (95% over 21bp)
AATGATACGGCTGTCTCTTATACACATCTGACGCTGTTCGGATCGTATGCC	3537	0.39836105454742043	No Hit
AATCTGTCTCTTATACACATCTGACGCTGTTCGGATCGTATGCCGTCTTCT	3377	0.3803407636999261	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCTGTTCGGATCGTATGCCGT	3302	0.3718937523651632	No Hit
CCTGTCTCTTATACACATCTGACGCTGTTCGGATCGTATGCCGTCTTCTGC	993	0.11183843007226138	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	929	0.10463031373326365	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CAACGCG	35	1.2115015E-7	45.000004	1
CGAAACG	35	1.2115015E-7	45.000004	1
ACGCGAG	50	2.1827873E-11	45.0	1
TAATACG	20	7.032419E-4	45.0	1
ACTATCG	20	7.032419E-4	45.0	1
CCGATCA	20	7.032419E-4	45.0	10
TTAGCGT	20	7.032419E-4	45.0	43
TAGAACG	40	6.8121153E-9	45.0	1
TAGCGCG	55	1.8189894E-12	45.0	1
CGGATAA	25	3.8900856E-5	45.0	28
ACGTCTA	20	7.032419E-4	45.0	19
CGTAACG	45	3.8380676E-10	45.0	1
CGGTCTA	25	3.8900856E-5	45.0	31
ATTGCGA	20	7.032419E-4	45.0	29
TATACCG	25	3.8900856E-5	45.0	1
CGATCGA	20	7.032419E-4	45.0	40
CAATACG	50	2.1827873E-11	45.0	1
TCAAACG	25	3.8900856E-5	45.0	1
CTAGACG	30	2.1649412E-6	44.999996	1
CTATCGG	30	2.1649412E-6	44.999996	2