SRR3548483_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548483_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	527965
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCTTAGACGGTCGTATGCCGTCTTCTGCT	2042	0.38676806227685545	Illumina Single End Adapter 1 (95% over 21bp)
AATGATACGGCTGTCTCTTATACACATCTGACGCTTAGACGGTCGTATGCC	1490	0.28221567717557033	No Hit
AATCTGTCTCTTATACACATCTGACGCTTAGACGGTCGTATGCCGTCTTCT	1247	0.23618989895163506	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCTTAGACGGTCGTATGCCGT	1186	0.22463610277196405	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	871	0.16497305692612202	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	677	0.12822819694487322	No Hit
ATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCATA	658	0.12462947354464785	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAACAG	30	2.1632623E-6	45.000004	1
CATGACG	30	2.1632623E-6	45.000004	1
CGACAAA	30	2.1632623E-6	45.000004	19
CGAATAT	85	0.0	45.000004	13
CGATCTG	30	2.1632623E-6	45.000004	1
TATCGCG	30	2.1632623E-6	45.000004	1
ATACCCG	30	2.1632623E-6	45.000004	1
TTCTACG	40	6.8030204E-9	45.0	1
GGTACGT	20	7.029818E-4	45.0	8
TGCCCTA	20	7.029818E-4	45.0	33
AGATCGA	20	7.029818E-4	45.0	12
GCGACAT	20	7.029818E-4	45.0	21
GGTAATC	25	3.88793E-5	45.0	8
GATCGAT	25	3.88793E-5	45.0	9
GATCGAC	25	3.88793E-5	45.0	9
AGATACG	25	3.88793E-5	45.0	1
CGAAACG	25	3.88793E-5	45.0	1
CGCGGAC	20	7.029818E-4	45.0	4
CGCATAG	20	7.029818E-4	45.0	1
CGTTGAG	40	6.8030204E-9	45.0	1