SRR3548482_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548482_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	440669
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per Sequence quality graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCGTGCAGTATCGTATGCCGTCTTCTGCT	2590	0.5877427275347257	TruSeq Adapter, Index 14 (95% over 22bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1293	0.2934175083793051	No Hit
AAACTGTCTCTTATACACATCTGACGCGTGCAGTATCGTATGCCGTCTTCT	724	0.16429565047688854	TruSeq Adapter, Index 15 (95% over 21bp)
CGCAACGGGAGAAACAAGCGAGATAGGAATGTCTTACACGCGGGGCAAGAC	632	0.1434183026262342	No Hit
AAAAACTGTCTCTTATACACATCTGACGCGTGCAGTATCGTATGCCGTCTT	595	0.1350219779471667	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	492	0.11164842546219499	No Hit
CGCAGCGGGAGAAACAAGCGAGATAGGAATGTCTTACACGCGGGGCAAGAC	466	0.10574830541744484	No Hit
CCTGTCTCTTATACACATCTGACGCGTGCAGTATCGTATGCCGTCTTCTGC	454	0.10302517308909863	TruSeq Adapter, Index 15 (95% over 23bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTTAGCG	30	2.1624437E-6	45.000004	1
CTGTCCG	20	7.0285454E-4	45.000004	45
TACCCGG	30	2.1624437E-6	45.000004	2
AAATCCG	30	2.1624437E-6	45.000004	1
CTGTACG	20	7.0285454E-4	45.000004	1
CGAGTGA	20	7.0285454E-4	45.000004	13
CTATCTA	20	7.0285454E-4	45.000004	36
ACACCCG	40	6.7993824E-9	45.000004	1
ATCAGTA	20	7.0285454E-4	45.000004	18
AACCACG	40	6.7993824E-9	45.000004	1
ATTACGA	20	7.0285454E-4	45.000004	20
CGCGCGA	20	7.0285454E-4	45.000004	16
CGACACT	20	7.0285454E-4	45.000004	27
TAGCACG	30	2.1624437E-6	45.000004	1
ATATCGG	20	7.0285454E-4	45.000004	2
TGACCGG	30	2.1624437E-6	45.000004	2
ACGGCTT	40	6.7993824E-9	45.000004	20
CGCTAAG	20	7.0285454E-4	45.000004	1
AACGCAT	20	7.0285454E-4	45.000004	17
GTCCGAC	20	7.0285454E-4	45.000004	40