SRR3548480_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548480_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1195346
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AATGATACGGCTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGCC	15746	1.3172755001480743	No Hit
AATCTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGCCGTCTTCT	15583	1.3036392810115232	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGCCGT	15533	1.2994563917058324	No Hit
CTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGCCGTCTTCTGCT	6434	0.5382541958562626	Illumina Single End Adapter 1 (95% over 21bp)
AATGACTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGCCGTCTT	4145	0.34676152344174827	No Hit
AATGATCTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGCCGTCT	3245	0.27146951593931795	No Hit
AACTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGCCGTCTTCTG	2914	0.24377878873564643	No Hit
AATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAGCTCTGTTC	2321	0.19416972157015625	No Hit
AATGATACGGCGACTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTAT	2311	0.19333314370901813	No Hit
AATGCTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGCCGTCTTC	1347	0.11268703789530396	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTTAGCG	25	3.890899E-5	45.000004	1
TAACGCG	100	0.0	45.000004	1
TCGATAG	25	3.890899E-5	45.000004	1
AACGCGC	25	3.890899E-5	45.000004	19
CGTCGCA	25	3.890899E-5	45.000004	19
ATACGTC	25	3.890899E-5	45.000004	5
TATCGTC	25	3.890899E-5	45.000004	31
AACCGAT	20	7.0334005E-4	45.0	36
CCGGGTA	105	0.0	45.0	5
ATCGTAG	20	7.0334005E-4	45.0	1
GTAATCG	20	7.0334005E-4	45.0	26
TCAATCG	20	7.0334005E-4	45.0	1
TACGCCC	20	7.0334005E-4	45.0	29
TCTACCG	20	7.0334005E-4	45.0	1
CTACGGT	20	7.0334005E-4	45.0	27
TCGCTTA	20	7.0334005E-4	45.0	23
GCCTCGT	20	7.0334005E-4	45.0	30
CTCGCAC	20	7.0334005E-4	45.0	30
TCGTACC	20	7.0334005E-4	45.0	16
CCGACGT	20	7.0334005E-4	45.0	43