SRR3548475_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548475_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	529889
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCAGCTACCATCGTATGCCGTCTTCTGCT	3902	0.7363806382091344	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1097	0.2070244900347054	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	919	0.17343254908103395	No Hit
AATCTGTCTCTTATACACATCTGACGCAGCTACCATCGTATGCCGTCTTCT	875	0.16512892322731743	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCAGCTACCATCGTATGCC	794	0.1498427029057029	No Hit
CCTGTCTCTTATACACATCTGACGCAGCTACCATCGTATGCCGTCTTCTGC	742	0.14002932689676517	No Hit
AAACTGTCTCTTATACACATCTGACGCAGCTACCATCGTATGCCGTCTTCT	667	0.12587541919156653	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCAGCTACCATCGTATGCCGT	652	0.1230446376505268	No Hit
AAAAACTGTCTCTTATACACATCTGACGCAGCTACCATCGTATGCCGTCTT	603	0.11379741794979703	No Hit
ATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCATA	563	0.1062486671736911	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCAACCG	30	2.1632786E-6	45.000004	1
ACTAGCG	30	2.1632786E-6	45.000004	1
CGTGGAC	20	7.029842E-4	45.0	21
TAATACG	20	7.029842E-4	45.0	1
TTAATCG	55	1.8189894E-12	45.0	20
GAATGCG	20	7.029842E-4	45.0	1
GAACTCG	20	7.029842E-4	45.0	36
CGCATAG	35	1.2102646E-7	45.0	1
GGGTACG	40	6.8030204E-9	45.0	7
TTATCCG	20	7.029842E-4	45.0	1
CCATGCG	25	3.8879494E-5	45.0	1
TATTGTC	20	7.029842E-4	45.0	19
CGTAGCG	25	3.8879494E-5	45.0	1
AACGATT	20	7.029842E-4	45.0	12
CGAATAG	20	7.029842E-4	45.0	1
ACTCGTC	20	7.029842E-4	45.0	15
CGTAATG	25	3.8879494E-5	45.0	1
GATTGCG	20	7.029842E-4	45.0	1
CACGTTG	20	7.029842E-4	45.0	17
CAACTCG	20	7.029842E-4	45.0	1