SRR3548474_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548474_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	592430
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCCTGCCTAATCGTATGCCGTCTTCTGCT	3216	0.542848944179059	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1215	0.2050875208885438	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	1085	0.18314400013503704	No Hit
AAACTGTCTCTTATACACATCTGACGCCTGCCTAATCGTATGCCGTCTTCT	947	0.1598501088736222	No Hit
AAAAACTGTCTCTTATACACATCTGACGCCTGCCTAATCGTATGCCGTCTT	713	0.12035177151731005	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATTACCG	30	2.1637134E-6	45.000004	1
TAACGAG	65	0.0	45.000004	1
ACGATAG	30	2.1637134E-6	45.000004	1
CTAACCG	45	3.8380676E-10	45.000004	1
GTTAACG	30	2.1637134E-6	45.000004	1
CGCTACG	45	3.8380676E-10	45.000004	1
GTACTAG	45	3.8380676E-10	45.000004	1
CGTGTTA	30	2.1637134E-6	45.000004	41
TATAATC	30	2.1637134E-6	45.000004	37
CGATACG	30	2.1637134E-6	45.000004	1
TGCCGGT	30	2.1637134E-6	45.000004	26
AAACTCG	20	7.030515E-4	45.0	18
CGGCGTA	20	7.030515E-4	45.0	42
AGTCCGT	25	3.8885097E-5	45.0	16
TCGTTAC	25	3.8885097E-5	45.0	10
GGTAATC	25	3.8885097E-5	45.0	35
GATCGCG	20	7.030515E-4	45.0	29
CGAAATA	20	7.030515E-4	45.0	13
AGATACG	25	3.8885097E-5	45.0	1
GCGCGTT	20	7.030515E-4	45.0	9