SRR3548473_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548473_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	599416
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCCTGCCTAATCGTATGCCGTCTTCTGCT	3572	0.5959133556661818	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1290	0.21520947055133663	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	1068	0.17817342213087406	No Hit
AAACTGTCTCTTATACACATCTGACGCCTGCCTAATCGTATGCCGTCTTCT	988	0.1648270983757524	No Hit
AAAAACTGTCTCTTATACACATCTGACGCCTGCCTAATCGTATGCCGTCTT	786	0.13112763089407023	No Hit
CCTGTCTCTTATACACATCTGACGCCTGCCTAATCGTATGCCGTCTTCTGC	654	0.1091061966981195	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCATAG	65	0.0	45.000004	1
TATCATC	20	7.030583E-4	45.0	43
CTGTCGT	25	3.8885642E-5	45.0	19
AAATCGA	25	3.8885642E-5	45.0	40
GTCGAGT	20	7.030583E-4	45.0	38
CCGATAT	20	7.030583E-4	45.0	7
CGTGCAT	20	7.030583E-4	45.0	13
CGTTGTA	20	7.030583E-4	45.0	24
CTATACG	25	3.8885642E-5	45.0	1
ATTACGC	20	7.030583E-4	45.0	28
GGTCCGA	25	3.8885642E-5	45.0	11
GCGCCCA	25	3.8885642E-5	45.0	15
CGTCTAT	20	7.030583E-4	45.0	45
ATTCGAT	20	7.030583E-4	45.0	27
CGATTTA	20	7.030583E-4	45.0	29
ATAGACC	20	7.030583E-4	45.0	27
ACTTATG	20	7.030583E-4	45.0	1
TAACGAG	25	3.8885642E-5	45.0	1
CGTTCGA	25	3.8885642E-5	45.0	43
TAGCCCG	40	6.8048394E-9	45.0	28