SRR3548471_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548471_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	399452
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCGTTATGCGTCGTATGCCGTCTTCTGCT	2226	0.557263450927771	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2205	0.5520062485605279	No Hit
AAACTGTCTCTTATACACATCTGACGCGTTATGCGTCGTATGCCGTCTTCT	1068	0.2673662918197931	No Hit
AAAAACTGTCTCTTATACACATCTGACGCGTTATGCGTCGTATGCCGTCTT	991	0.24808988313990166	No Hit
CCTGTCTCTTATACACATCTGACGCGTTATGCGTCGTATGCCGTCTTCTGC	627	0.15696504210768752	No Hit
CGCAACGGGAGAAACAAGCGAGATAGGAATGTCTTACACGCGGGGCAAGAC	547	0.13693760451818993	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	493	0.12341908414527902	No Hit
AAAAAACTGTCTCTTATACACATCTGACGCGTTATGCGTCGTATGCCGTCT	488	0.12216736929593544	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	421	0.10539439031473118	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGATCCG	20	7.027754E-4	45.0	18
TATTTCG	20	7.027754E-4	45.0	1
AACGTTC	20	7.027754E-4	45.0	26
TAGAGTT	25	3.88622E-5	45.0	37
AACGTAC	35	1.2092642E-7	45.0	26
AAACTAT	20	7.027754E-4	45.0	24
AACCGAT	20	7.027754E-4	45.0	36
CGAACTT	20	7.027754E-4	45.0	29
GCGACAC	20	7.027754E-4	45.0	21
AGTTTCG	20	7.027754E-4	45.0	20
CACGGTT	20	7.027754E-4	45.0	22
CCGATAA	20	7.027754E-4	45.0	38
ACGCACG	25	3.88622E-5	45.0	1
CGCATTC	25	3.88622E-5	45.0	25
CGCATAG	40	6.7957444E-9	45.0	1
CCGGATT	25	3.88622E-5	45.0	19
ACCGATA	20	7.027754E-4	45.0	37
GTCTCGA	20	7.027754E-4	45.0	31
TAAACGT	20	7.027754E-4	45.0	24
GCCGGAT	20	7.027754E-4	45.0	18