##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3548470_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 230526 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.665721003270782 31.0 31.0 34.0 30.0 34.0 2 31.84731006480831 33.0 31.0 34.0 30.0 34.0 3 32.01808906587543 33.0 31.0 34.0 30.0 34.0 4 35.69919228199856 37.0 35.0 37.0 33.0 37.0 5 35.43490539028136 37.0 35.0 37.0 33.0 37.0 6 34.773791242636406 37.0 35.0 37.0 32.0 37.0 7 35.104118407468135 37.0 35.0 37.0 32.0 37.0 8 35.54390394142092 37.0 35.0 37.0 33.0 37.0 9 37.207651197695704 39.0 37.0 39.0 34.0 39.0 10 36.82545135906579 39.0 37.0 39.0 32.0 39.0 11 36.82456208844122 39.0 37.0 39.0 32.0 39.0 12 36.68309865264656 39.0 35.0 39.0 32.0 39.0 13 36.65776962251547 39.0 35.0 39.0 32.0 39.0 14 37.75975811839012 40.0 37.0 41.0 33.0 41.0 15 37.830292461587845 40.0 37.0 41.0 33.0 41.0 16 37.66025524235878 39.0 36.0 41.0 32.0 41.0 17 37.65400865845935 39.0 36.0 41.0 33.0 41.0 18 37.5679315999063 39.0 36.0 41.0 32.0 41.0 19 37.50777786453589 39.0 36.0 41.0 32.0 41.0 20 37.48930706297771 39.0 36.0 41.0 32.0 41.0 21 37.449623903594386 39.0 36.0 41.0 32.0 41.0 22 37.445385769934845 39.0 36.0 41.0 32.0 41.0 23 37.32191162818945 39.0 36.0 41.0 32.0 41.0 24 37.1919826830813 39.0 35.0 41.0 32.0 41.0 25 37.25212340473526 39.0 35.0 41.0 32.0 41.0 26 37.20296625977113 39.0 35.0 41.0 32.0 41.0 27 37.07826015286779 39.0 35.0 41.0 31.0 41.0 28 37.02715528834058 39.0 35.0 41.0 31.0 41.0 29 36.775999236528634 39.0 35.0 40.0 31.0 41.0 30 36.78540381562166 39.0 35.0 40.0 31.0 41.0 31 36.783976644716866 39.0 35.0 40.0 31.0 41.0 32 36.63030200497992 39.0 35.0 40.0 31.0 41.0 33 36.466745616546504 39.0 35.0 40.0 30.0 41.0 34 36.45282527784285 39.0 35.0 40.0 30.0 41.0 35 36.41389691401404 39.0 35.0 40.0 30.0 41.0 36 36.34844659604556 39.0 35.0 40.0 30.0 41.0 37 36.26543209876543 39.0 35.0 40.0 30.0 41.0 38 36.08828071453979 38.0 35.0 40.0 30.0 41.0 39 36.01543860562366 38.0 35.0 40.0 30.0 41.0 40 35.920815873263756 38.0 35.0 40.0 29.0 41.0 41 35.9152156372817 38.0 35.0 40.0 30.0 41.0 42 35.80861594787573 38.0 35.0 40.0 29.0 41.0 43 35.71099138491971 38.0 35.0 40.0 29.0 41.0 44 35.609709967639226 38.0 35.0 40.0 29.0 41.0 45 35.44253142812524 38.0 34.0 40.0 28.0 41.0 46 35.17150343128324 38.0 34.0 40.0 27.0 41.0 47 35.10823941767957 37.0 34.0 40.0 27.0 41.0 48 35.01860093872275 37.0 34.0 40.0 26.0 41.0 49 34.91292088527975 37.0 34.0 40.0 26.0 41.0 50 34.84861143645402 37.0 34.0 40.0 26.0 41.0 51 33.50599064747577 36.0 32.0 39.0 22.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 1.0 12 2.0 13 1.0 14 6.0 15 14.0 16 28.0 17 68.0 18 125.0 19 250.0 20 429.0 21 710.0 22 1034.0 23 1212.0 24 1434.0 25 1765.0 26 1903.0 27 2237.0 28 2647.0 29 3464.0 30 4553.0 31 5817.0 32 7848.0 33 10767.0 34 16093.0 35 20507.0 36 23110.0 37 32118.0 38 46324.0 39 46045.0 40 13.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 20.018132444930288 35.25329030131091 17.856554141398366 26.872023112360427 2 21.820098383696415 35.669729227939584 18.61308485810711 23.89708753025689 3 19.960872092518848 31.94650494955016 22.82085317925093 25.271769778680063 4 23.600808585582538 31.445910656498615 18.64128124376426 26.31199951415459 5 17.66742146222118 36.564205339094066 18.121166376027 27.64720682265775 6 19.712310108187364 35.78164718947103 22.305076216999385 22.200966485342217 7 75.97104014297736 10.21359846611662 8.07240831836756 5.742953072538456 8 77.72095121591491 6.226195743647137 6.233136392424282 9.819716648013673 9 72.62521364184518 9.621474367316484 11.662025107796952 6.091286883041392 10 34.06470419822492 30.97481412074994 15.369632926437799 19.590848754587334 11 25.102157674188597 29.083487328978073 26.16277556544598 19.651579431387347 12 25.1173403433886 24.639303158862774 31.142691063047117 19.100665434701508 13 25.187180621708617 27.06809644031476 26.17188516696598 21.572837771010644 14 18.787902449181438 27.662389491857752 31.264586207195716 22.285121851765094 15 18.157170991558434 30.395269947858377 27.55177290197201 23.895786158611177 16 18.086029341592706 30.165360957115467 27.804239001240642 23.944370700051188 17 18.508107545352804 28.796317985823727 28.950313630566615 23.745260838256858 18 21.77021247061069 26.357547521754597 25.576724534325844 26.295515473308868 19 20.476649054770395 31.959084875458732 27.114512029011912 20.44975404075896 20 23.73268091234828 27.855860076520656 26.014419197834513 22.397039813296548 21 21.363316936050598 30.502416213355545 25.266998082645774 22.867268767948083 22 21.050120159981955 28.75771062700086 25.710765813834445 24.48140339918274 23 21.936788041262155 29.15376139784666 23.21473499735388 25.6947155635373 24 17.97281000841554 31.558696199127212 25.171130371411465 25.29736342104578 25 19.67543791155878 28.75380651206372 25.910743256725922 25.66001231965158 26 24.07797818901122 28.67355526057798 23.512749104222515 23.735717446188282 27 18.844729011044308 28.74903481602943 25.4387791398801 26.967457033046166 28 21.126901087079116 27.185653678977644 27.743074533892052 23.944370700051188 29 23.655466194702548 30.508055490486974 23.136652698611 22.699825616199472 30 21.282198103467724 28.909971109549463 24.706540693891363 25.10129009309145 31 24.073640283525503 28.145198372417862 22.464277348325133 25.316883995731498 32 23.487589252405368 29.176318506372382 22.956195830405246 24.379896410817 33 22.301172102062242 25.253116785091485 25.099554930897167 27.346156181949105 34 20.04025576290744 27.45677277183485 28.630609996269403 23.872361468988313 35 24.592887570165622 27.15919245551478 24.883093447159972 23.364826527159625 36 22.401811509330834 28.132618446509287 26.476406132063197 22.989163912096682 37 23.594301727353965 29.114286457926653 22.095989172587906 25.195422642131472 38 22.78094444878235 28.160381041617867 24.945993076702845 24.11268143289694 39 21.684321941993527 25.306473022565783 26.522821720760348 26.48638331468034 40 25.402774524348665 25.14293398575432 25.885583404908775 23.568708084988245 41 22.518067376348007 22.4495284696737 29.861273782566826 25.171130371411465 42 26.017021941125947 24.241517225822683 26.105515213034536 23.635945620016834 43 23.497566435022513 23.357885878382483 26.840790192863277 26.303757493731727 44 22.541925856519438 24.34172284254271 25.614898102600144 27.501453198337718 45 26.57140626220036 23.34010046589105 25.33640457041722 24.752088701491374 46 19.352697743421565 23.893617205868317 31.084129338989964 25.669555711720154 47 22.29032733834795 25.1173403433886 25.743300104977312 26.84903221328614 48 21.77932207213069 23.136218908062432 32.15992989944735 22.924529120359527 49 23.62379948465683 21.343796361364877 28.04325759350355 26.98914656047474 50 20.970302699044794 22.415259016336552 26.92971725532044 29.68472102929821 51 20.451489202953248 21.1377458507934 31.677988599984385 26.732776346268967 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1739.0 1 1391.5 2 1044.0 3 744.5 4 445.0 5 415.0 6 385.0 7 420.5 8 456.0 9 452.5 10 449.0 11 499.0 12 549.0 13 550.5 14 552.0 15 619.5 16 687.0 17 695.5 18 704.0 19 750.0 20 796.0 21 848.5 22 901.0 23 982.0 24 1063.0 25 1227.0 26 1576.0 27 1761.0 28 1935.5 29 2110.0 30 2673.0 31 3236.0 32 3210.0 33 3184.0 34 3747.5 35 4311.0 36 4662.5 37 5014.0 38 5712.5 39 6411.0 40 6599.0 41 6787.0 42 8551.5 43 10316.0 44 15018.5 45 19721.0 46 21048.0 47 22375.0 48 23396.0 49 24417.0 50 23167.0 51 21917.0 52 19976.5 53 18036.0 54 16399.5 55 14763.0 56 13670.5 57 12578.0 58 11070.5 59 9563.0 60 8934.0 61 8305.0 62 7726.5 63 7148.0 64 6024.0 65 4900.0 66 4286.0 67 3672.0 68 3272.5 69 2873.0 70 2281.5 71 1690.0 72 1566.0 73 1442.0 74 1178.5 75 1022.0 76 1129.0 77 815.5 78 502.0 79 349.5 80 197.0 81 123.0 82 49.0 83 36.0 84 23.0 85 15.0 86 7.0 87 7.5 88 8.0 89 5.0 90 2.0 91 2.0 92 2.0 93 1.5 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 230526.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 32.802373701881784 #Duplication Level Percentage of deduplicated Percentage of total 1 77.79893676108863 25.519897972462974 2 9.608823296040626 6.303844251841441 3 3.390727075564019 3.336716899612191 4 1.61205004099553 2.115162714834769 5 0.9243830833928429 1.5160979672574892 6 0.6638631013779788 1.3065771322974415 7 0.5170726546589437 1.1872847314402715 8 0.3887963183369039 1.0202753702402332 9 0.31870718611970694 0.9408916998516436 >10 3.940860641646169 30.391799623469808 >50 0.7405644158798169 15.89538707130649 >100 0.08199106032955115 4.3964672097724335 >500 0.006612182284641223 1.384225640491745 >1k 0.006612182284641223 4.685371715121071 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source AATGATACGGCTGTCTCTTATACACATCTGACGCTGACACTGTCGTATGCC 2489 1.0797046753945325 No Hit AATGATACCTGTCTCTTATACACATCTGACGCTGACACTGTCGTATGCCGT 2370 1.0280836001145206 No Hit CTGTCTCTTATACACATCTGACGCTGACACTGTCGTATGCCGTCTTCTGCT 2279 0.9886086601945118 TruSeq Adapter, Index 13 (95% over 23bp) AATCTGTCTCTTATACACATCTGACGCTGACACTGTCGTATGCCGTCTTCT 2191 0.9504350919202172 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1472 0.6385396874972888 No Hit AAACTGTCTCTTATACACATCTGACGCTGACACTGTCGTATGCCGTCTTCT 837 0.3630826891543687 No Hit AATGACTGTCTCTTATACACATCTGACGCTGACACTGTCGTATGCCGTCTT 660 0.2863017620572083 No Hit AAAAACTGTCTCTTATACACATCTGACGCTGACACTGTCGTATGCCGTCTT 636 0.2758907888914916 No Hit AATGATCTGTCTCTTATACACATCTGACGCTGACACTGTCGTATGCCGTCT 538 0.2333793151314819 No Hit AACTGTCTCTTATACACATCTGACGCTGACACTGTCGTATGCCGTCTTCTG 520 0.2255710852571944 TruSeq Adapter, Index 19 (95% over 21bp) CCTGTCTCTTATACACATCTGACGCTGACACTGTCGTATGCCGTCTTCTGC 435 0.18869888862861456 TruSeq Adapter, Index 19 (95% over 22bp) AATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTGACACTGTC 419 0.1817582398514701 No Hit AATGATACGGCGACTGTCTCTTATACACATCTGACGCTGACACTGTCGTAT 380 0.16484040845718054 No Hit AAAAAACTGTCTCTTATACACATCTGACGCTGACACTGTCGTATGCCGTCT 331 0.14358467157717567 No Hit CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 323 0.14011434718860344 No Hit TTAGCTGGGGGGAATTTGGCCCCTCCTTAAATAAAAAAAAATCATCCTTTA 285 0.1236303063428854 No Hit GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 279 0.12102756305145622 No Hit GAAAAACTGTCTCTTATACACATCTGACGCTGACACTGTCGTATGCCGTCT 268 0.11625586701716943 No Hit ACCTGTCTCTTATACACATCTGACGCTGACACTGTCGTATGCCGTCTTCTG 262 0.11365312372574027 TruSeq Adapter, Index 13 (95% over 21bp) CGCGACGGGAGAAACAAGCGAGATAGGAATGTCTTACACGCGGGGCAAGAC 248 0.10758005604573889 No Hit AGCCTGTCTCTTATACACATCTGACGCTGACACTGTCGTATGCCGTCTTCT 234 0.10150698836573749 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 1.0870791147202485 0.0 2 0.0 0.0 0.0 1.525641359326063 0.0 3 0.0 0.0 0.0 2.223610351977651 0.0 4 0.0 0.0 0.0 5.239756036195484 0.0 5 0.0 0.0 0.0 5.666172145441295 0.0 6 0.0 0.0 0.0 7.695010541110331 0.0 7 0.0 0.0 0.0 9.29916798972784 0.0 8 0.0 0.0 0.0 10.429626159305242 0.0 9 0.0 0.0 0.0 12.713533397534334 0.0 10 0.0 0.0 0.0 14.97228078394628 0.0 11 0.0 0.0 0.0 17.704727449398334 0.0 12 0.0 0.0 0.0 18.650824635832834 0.0 13 0.0 0.0 0.0 19.10717229293008 0.0 14 0.0 0.0 0.0 19.66589451949021 0.0 15 0.0 0.0 0.0 20.065415614724586 0.0 16 0.0 0.0 0.0 20.85578199422191 0.0 17 0.0 0.0 0.0 21.728134787399252 0.0 18 0.0 0.0 0.0 23.296721411033896 0.0 19 0.0 0.0 0.0 23.77736133885115 0.0 20 0.0 0.0 0.0 24.330010497731276 0.0 21 0.0 0.0 0.0 24.863139081925684 0.0 22 0.0 0.0 0.0 25.38498911185723 0.0 23 0.0 0.0 0.0 25.875172431743056 0.0 24 0.0 0.0 0.0 26.238688911445998 0.0 25 0.0 0.0 0.0 26.55795875519464 0.0 26 0.0 0.0 0.0 26.880265132783286 0.0 27 0.0 0.0 0.0 27.248987099069087 0.0 28 0.0 0.0 0.0 27.598622281217736 0.0 29 0.0 0.0 0.0 27.930038260326384 0.0 30 0.0 0.0 0.0 28.486157743595083 0.0 31 0.0 0.0 0.0 28.836660506840875 0.0 32 0.0 0.0 0.0 29.17545092527524 0.0 33 0.0 0.0 0.0 29.513807553161033 0.0 34 0.0 0.0 0.0 29.835246349652532 0.0 35 0.0 0.0 0.0 30.17186781534404 0.0 36 0.0 0.0 0.0 30.462941273435533 0.0 37 0.0 0.0 0.0 30.773535306212747 0.0 38 0.0 0.0 0.0 31.087165872829964 0.0 39 0.0 0.0 0.0 31.425522500715754 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ATCCTGC 30 2.1579272E-6 45.000004 20 ATGGGAC 30 2.1579272E-6 45.000004 5 ACCGAAC 30 2.1579272E-6 45.000004 32 TCGGGCA 30 2.1579272E-6 45.000004 5 GTGGCGA 30 2.1579272E-6 45.000004 28 CCGTCAT 30 2.1579272E-6 45.000004 28 AGACGTG 30 2.1579272E-6 45.000004 24 TACGCGG 30 2.1579272E-6 45.000004 2 TCTAAAC 30 2.1579272E-6 45.000004 34 GTACTGG 30 2.1579272E-6 45.000004 2 CTACCGA 30 2.1579272E-6 45.000004 30 TCGTAGC 30 2.1579272E-6 45.000004 23 ACATGCG 30 2.1579272E-6 45.000004 1 GAACCCG 30 2.1579272E-6 45.000004 18 TGCAGGT 30 2.1579272E-6 45.000004 32 CGTCATG 30 2.1579272E-6 45.000004 29 TGCGTTC 30 2.1579272E-6 45.000004 24 TACCGAA 30 2.1579272E-6 45.000004 31 TGATCAG 25 3.881074E-5 45.0 14 ATTTATG 20 7.021543E-4 45.0 43 >>END_MODULE