##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3548466_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 233798 Sequences flagged as poor quality 0 Sequence length 51 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.43023892419952 31.0 31.0 34.0 30.0 34.0 2 31.629321037818972 31.0 31.0 34.0 30.0 34.0 3 31.856910666472768 33.0 31.0 34.0 30.0 34.0 4 35.57379019495462 37.0 35.0 37.0 33.0 37.0 5 35.34425444186862 37.0 35.0 37.0 33.0 37.0 6 34.68261490688543 37.0 35.0 37.0 32.0 37.0 7 35.11726362073243 37.0 35.0 37.0 32.0 37.0 8 35.49446103046219 37.0 35.0 37.0 33.0 37.0 9 36.97545744617148 39.0 37.0 39.0 33.0 39.0 10 36.637037100402914 38.0 35.0 39.0 32.0 39.0 11 36.75871051078281 39.0 36.0 39.0 32.0 39.0 12 36.84883531937827 39.0 37.0 39.0 33.0 39.0 13 36.79246614598927 39.0 37.0 39.0 33.0 39.0 14 37.86666267461655 39.0 37.0 41.0 33.0 41.0 15 37.90345084218 40.0 37.0 41.0 33.0 41.0 16 37.75280797953789 39.0 37.0 41.0 33.0 41.0 17 37.73429199565437 39.0 37.0 41.0 33.0 41.0 18 37.65878236768492 39.0 37.0 41.0 33.0 41.0 19 37.57935482767175 39.0 36.0 41.0 32.0 41.0 20 37.471702067596816 39.0 36.0 40.0 32.0 41.0 21 37.39927202114646 39.0 36.0 40.0 32.0 41.0 22 37.345674471124646 39.0 36.0 40.0 32.0 41.0 23 37.20712752033807 39.0 36.0 40.0 32.0 41.0 24 37.107267812385054 39.0 35.0 40.0 31.0 41.0 25 37.05969255511168 39.0 35.0 40.0 31.0 41.0 26 37.09161327299635 39.0 36.0 40.0 31.0 41.0 27 37.01219001017973 39.0 35.0 40.0 31.0 41.0 28 36.76601168530099 39.0 35.0 40.0 31.0 41.0 29 36.4982591810024 39.0 35.0 40.0 30.0 41.0 30 36.54873437753959 39.0 35.0 40.0 30.0 41.0 31 36.47807509046271 39.0 35.0 40.0 30.0 41.0 32 36.493284801409764 39.0 35.0 40.0 30.0 41.0 33 36.195728791520885 39.0 35.0 40.0 29.0 41.0 34 36.32371534401492 39.0 35.0 40.0 30.0 41.0 35 36.22723034414324 39.0 35.0 40.0 30.0 41.0 36 36.18546779698714 39.0 35.0 40.0 29.0 41.0 37 36.07331114894054 39.0 35.0 40.0 29.0 41.0 38 35.91940478532751 39.0 35.0 40.0 28.0 41.0 39 35.85548636002019 39.0 35.0 40.0 28.0 41.0 40 35.81934404913643 39.0 35.0 40.0 28.0 41.0 41 35.85663264869674 39.0 35.0 40.0 28.0 41.0 42 35.73238864318771 39.0 35.0 40.0 27.0 41.0 43 35.671545522202926 38.0 35.0 40.0 27.0 41.0 44 35.58856363185314 38.0 35.0 40.0 27.0 41.0 45 35.399678354819116 38.0 35.0 40.0 26.0 41.0 46 35.22572049375957 38.0 34.0 40.0 26.0 41.0 47 35.12807209642512 38.0 34.0 40.0 26.0 41.0 48 35.108456873027144 38.0 34.0 40.0 26.0 41.0 49 34.95766003130908 38.0 34.0 40.0 24.0 41.0 50 34.87681673923643 38.0 34.0 40.0 24.0 41.0 51 33.58581767166528 37.0 32.0 40.0 21.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 0.0 13 3.0 14 5.0 15 7.0 16 32.0 17 83.0 18 130.0 19 325.0 20 560.0 21 963.0 22 1330.0 23 1643.0 24 1843.0 25 1953.0 26 2164.0 27 2448.0 28 3006.0 29 3670.0 30 4745.0 31 6031.0 32 7926.0 33 10234.0 34 14144.0 35 19258.0 36 22867.0 37 32291.0 38 48078.0 39 48051.0 40 7.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 20.4394391739878 33.87710758860213 19.12206263526634 26.56139060214373 2 19.648585531099496 34.82750066296546 20.110950478618296 25.412963327316746 3 19.96980299232671 33.012686164980025 20.729433100368695 26.28807774232457 4 17.303826380037467 32.480175193970865 19.48091942617131 30.73507899982036 5 15.16009546702709 36.37841213355119 17.735395512365375 30.726096887056347 6 18.639594863942378 39.56663444511929 18.21786328368934 23.57590740724899 7 76.33042198821205 8.54113379926261 8.799048751486325 6.329395461039017 8 79.06098426847107 7.601005996629569 6.369173388993918 6.96883634590544 9 69.8222397112037 13.178042583768896 12.325597310498807 4.67412039452861 10 23.360764420568184 46.40416085680801 14.001830640125238 16.233244082498565 11 15.735806123234585 32.59352090265956 35.14401320798296 16.526659766122894 12 19.688791178709828 23.21106254116802 38.20691366051035 18.8932326196118 13 25.492946902881975 26.07592879323176 28.951060317025807 19.48006398686045 14 16.153688226588763 32.52080856123663 33.046903737414354 18.278599474760263 15 14.24220908647636 33.00798124877031 33.582836465666944 19.16697319908639 16 16.309378181164938 34.375828706832394 27.59219497172773 21.722598140274936 17 14.769587421620372 31.087519995893892 28.915987305280627 25.22690527720511 18 19.73669578011788 27.616147272431757 26.649073131506682 25.99808381594368 19 18.783308668166537 33.77702118923173 28.802641596591933 18.637028546009805 20 18.720861598473896 30.589654316974485 27.340695814335454 23.34878827021617 21 19.586993900717715 31.23166151977348 27.4061369216161 21.77520765789271 22 15.73067348736944 31.64098923001908 27.84369412912001 24.784643153491476 23 18.425307316572425 28.9685968228984 26.350097092361786 26.255998768167395 24 14.883788569619929 32.709860648936264 25.966432561441927 26.439918220001886 25 16.96293381466052 32.42713795669766 27.40357060368352 23.206357624958297 26 19.542083336897665 29.95534606797321 25.776097314776003 24.726473280353126 27 15.29097768158838 28.43095321602409 27.684154697644974 28.593914404742556 28 19.38254390542263 27.469011710964164 31.660664334168814 21.487780049444392 29 19.492895576523324 28.821033541775375 25.287641468276036 26.398429413425266 30 18.554478652511996 29.21881282132439 29.4339558080052 22.79275271815841 31 20.990342090180413 29.81163226374905 23.273509610860657 25.924516035209884 32 19.94798928989983 25.669595120574172 26.57037271490774 27.81204287461826 33 18.577147794249736 30.10590338668423 28.49810520192645 22.81884361713958 34 17.8491689407095 24.162738774497644 28.44592340396411 29.54216888082875 35 17.408617695617583 26.352663410294358 29.79708979546446 26.441629098623597 36 18.13616882950239 24.892428506659595 33.312089923780356 23.659312740057654 37 20.317539072190524 26.672597712555284 27.55626652067169 25.453596694582505 38 20.563477874062226 26.56695095766431 29.200420876140942 23.669150292132525 39 19.52155279343707 25.277803916201165 27.684154697644974 27.516488592716794 40 20.74440328830871 26.780810785378833 26.531450226263697 25.94333570004876 41 18.01041925080625 22.12037741982395 32.27786379695293 27.591339532416875 42 22.28547720681956 24.707225895858816 29.8830614462057 23.124235451115922 43 18.272611399584257 23.323125090890425 30.62985996458481 27.77440354494051 44 22.144757440183408 20.795729646960197 29.358677148649686 27.700835764206712 45 23.418506574051104 23.42962728509226 28.414699869117786 24.73716627173885 46 17.541210788800587 24.42065372672136 32.14569842342535 25.892437061052703 47 19.533101224133652 24.903121498045323 27.066099795550002 28.497677482271023 48 18.547207418369705 20.83422441594881 34.01397787833942 26.604590287342067 49 20.594701408908545 21.477942497369522 31.89291610706678 26.034439986655144 50 19.240968699475616 21.46168915046322 28.504520996757886 30.79282115330328 51 19.415050599235236 20.09512485136742 34.177366786713314 26.312457762684026 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 2723.0 1 2190.0 2 1657.0 3 1105.5 4 554.0 5 497.5 6 441.0 7 526.0 8 611.0 9 634.0 10 657.0 11 720.5 12 784.0 13 860.5 14 937.0 15 994.0 16 1051.0 17 1036.0 18 1021.0 19 1056.5 20 1092.0 21 1276.5 22 1461.0 23 1549.5 24 1638.0 25 1718.0 26 2081.0 27 2364.0 28 2577.0 29 2790.0 30 3472.0 31 4154.0 32 4077.5 33 4001.0 34 4225.0 35 4449.0 36 5442.5 37 6436.0 38 6873.0 39 7310.0 40 8052.5 41 8795.0 42 11172.0 43 13549.0 44 16976.5 45 20404.0 46 22313.5 47 24223.0 48 27682.0 49 31141.0 50 28267.0 51 25393.0 52 21823.0 53 18253.0 54 15686.5 55 13120.0 56 11132.0 57 9144.0 58 8165.5 59 7187.0 60 6267.0 61 5347.0 62 4264.5 63 3182.0 64 2549.0 65 1916.0 66 1809.0 67 1702.0 68 1321.0 69 940.0 70 824.0 71 708.0 72 554.5 73 401.0 74 303.5 75 121.0 76 36.0 77 76.5 78 117.0 79 86.5 80 56.0 81 33.0 82 10.0 83 20.0 84 30.0 85 18.0 86 6.0 87 3.0 88 0.0 89 1.0 90 2.0 91 1.5 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 233798.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 37.21631493853669 #Duplication Level Percentage of deduplicated Percentage of total 1 77.24080863339118 28.746182602075294 2 10.499821861603706 7.8152935439995215 3 3.7891760811851376 4.230575111848689 4 1.8560871613933871 2.7630689740716345 5 1.0883681373619427 2.025252568456531 6 0.683821585776511 1.5269591698816927 7 0.5229223891232143 1.3622871025415102 8 0.3942030318005769 1.1736627344973012 9 0.30685775361735873 1.0278103319959966 >10 2.9973221776556986 24.351363142541853 >50 0.49993678960131477 12.701990607276366 >100 0.11033087770511774 7.347795960615574 >500 0.005746399880474882 1.267333339036262 >1k 0.004597119904379906 3.6604248111617723 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CTGTCTCTTATACACATCTGACGCTCTGCACTTCGTATGCCGTCTTCTGCT 3649 1.5607490226605873 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 2364 1.0111292654342638 No Hit AAACTGTCTCTTATACACATCTGACGCTCTGCACTTCGTATGCCGTCTTCT 1452 0.6210489396829743 No Hit AAAAACTGTCTCTTATACACATCTGACGCTCTGCACTTCGTATGCCGTCTT 1093 0.46749758338394687 No Hit CCTGTCTCTTATACACATCTGACGCTCTGCACTTCGTATGCCGTCTTCTGC 735 0.3143739467403485 No Hit CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 630 0.2694633829202987 No Hit AAAAAACTGTCTCTTATACACATCTGACGCTCTGCACTTCGTATGCCGTCT 581 0.24850511980427548 No Hit GCCCCAGGGAATGATACCTGTCTCTTATACACATCTGACGCTCTGCACTTC 514 0.2198479028905294 No Hit AATCTGTCTCTTATACACATCTGACGCTCTGCACTTCGTATGCCGTCTTCT 503 0.21514298668080992 No Hit AGCCCCGGGAATGATACCTGTCTCTTATACACATCTGACGCTCTGCACTTC 460 0.19675104149736097 No Hit GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 456 0.19504016287564477 No Hit AGCCTGTCTCTTATACACATCTGACGCTCTGCACTTCGTATGCCGTCTTCT 424 0.18135313390191532 No Hit AATGATACGGCTGTCTCTTATACACATCTGACGCTCTGCACTTCGTATGCC 422 0.18049769459105725 No Hit AATGATACCTGTCTCTTATACACATCTGACGCTCTGCACTTCGTATGCCGT 404 0.1727987407933344 No Hit ACCTGTCTCTTATACACATCTGACGCTCTGCACTTCGTATGCCGTCTTCTG 381 0.16296118871846635 No Hit GAAAAACTGTCTCTTATACACATCTGACGCTCTGCACTTCGTATGCCGTCT 380 0.1625334690630373 No Hit AACCTGTCTCTTATACACATCTGACGCTCTGCACTTCGTATGCCGTCTTCT 366 0.15654539388703068 No Hit GCTGTCTCTTATACACATCTGACGCTCTGCACTTCGTATGCCGTCTTCTGC 343 0.14670784181216265 No Hit GAAAACTGTCTCTTATACACATCTGACGCTCTGCACTTCGTATGCCGTCTT 317 0.13558713077100745 No Hit AGCCCCGGGAATGATACGGCTGTCTCTTATACACATCTGACGCTCTGCACT 314 0.1343039718047203 No Hit GCCCCAGGGAATGATACGGCTGTCTCTTATACACATCTGACGCTCTGCACT 296 0.1266050180069975 No Hit GCTCCAGGGAATGATACCTGTCTCTTATACACATCTGACGCTCTGCACTTC 293 0.12532185904071036 No Hit CATGAATGATACGGCTGTCTCTTATACACATCTGACGCTCTGCACTTCGTA 284 0.12147238214184894 No Hit TACCTGTCTCTTATACACATCTGACGCTCTGCACTTCGTATGCCGTCTTCT 254 0.10864079247897758 No Hit GCCTGTCTCTTATACACATCTGACGCTCTGCACTTCGTATGCCGTCTTCTG 249 0.10650219420183235 No Hit TCTGTCTCTTATACACATCTGACGCTCTGCACTTCGTATGCCGTCTTCTGC 246 0.10521903523554521 No Hit GCTTATGGGATTATTTTGAGACTGGATTTTGGTGAAAAACAATTCATCCGG 245 0.10479131558011616 No Hit GAAACTGTCTCTTATACACATCTGACGCTCTGCACTTCGTATGCCGTCTTC 234 0.10008639937039666 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 1.6950529944653077 0.0 2 0.0 0.0 0.0 2.410627977998101 0.0 3 0.0 0.0 0.0 3.188650031223535 0.0 4 0.0 0.0 0.0 6.615539910521048 0.0 5 0.0 0.0 0.0 7.168581424990804 0.0 6 0.0 0.0 0.0 9.618987330943806 0.0 7 0.0 0.0 0.0 11.574093875909973 0.0 8 0.0 0.0 0.0 13.00053892676584 0.0 9 0.0 0.0 0.0 14.904319113080522 0.0 10 0.0 0.0 0.0 17.888519149008975 0.0 11 0.0 0.0 0.0 20.30513520218308 0.0 12 0.0 0.0 0.0 21.714043747166357 0.0 13 0.0 0.0 0.0 22.41593170172542 0.0 14 0.0 0.0 0.0 22.95870794446488 0.0 15 0.0 0.0 0.0 23.588738996911864 0.0 16 0.0 0.0 0.0 24.704659577926243 0.0 17 0.0 0.0 0.0 26.133670946714684 0.0 18 0.0 0.0 0.0 28.649090240292903 0.0 19 0.0 0.0 0.0 29.3543999520954 0.0 20 0.0 0.0 0.0 30.575967288000754 0.0 21 0.0 0.0 0.0 31.336452835353597 0.0 22 0.0 0.0 0.0 32.23423639209916 0.0 23 0.0 0.0 0.0 33.08710938502468 0.0 24 0.0 0.0 0.0 33.60251156981668 0.0 25 0.0 0.0 0.0 34.084123901829784 0.0 26 0.0 0.0 0.0 34.51056039829254 0.0 27 0.0 0.0 0.0 35.25693119701623 0.0 28 0.0 0.0 0.0 35.84290712495402 0.0 29 0.0 0.0 0.0 36.34376684146143 0.0 30 0.0 0.0 0.0 37.202627909562956 0.0 31 0.0 0.0 0.0 37.67910760571091 0.0 32 0.0 0.0 0.0 38.14403887116229 0.0 33 0.0 0.0 0.0 38.59442766832907 0.0 34 0.0 0.0 0.0 39.04909366205015 0.0 35 0.0 0.0 0.0 39.559790930632424 0.0 36 0.0 0.0 0.0 40.03284886953695 0.0 37 0.0 0.0 0.0 40.51617208017177 0.0 38 0.0 0.0 0.0 40.969127195271135 0.0 39 0.0 0.0 0.0 41.408395281396764 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGGGTTT 30 2.15806E-6 45.000004 6 GTCATCT 20 7.021745E-4 45.000004 37 CAGAATC 30 2.15806E-6 45.000004 25 AACAATT 40 6.7757355E-9 45.000004 38 ACTATTA 20 7.021745E-4 45.000004 19 ATGGGCC 20 7.021745E-4 45.000004 5 AAGTAGG 30 2.15806E-6 45.000004 2 ACTATGG 20 7.021745E-4 45.000004 2 CAGCGCG 30 2.15806E-6 45.000004 1 AGCAAAA 20 7.021745E-4 45.000004 40 TTGGCGG 20 7.021745E-4 45.000004 35 ATCTCCC 30 2.15806E-6 45.000004 10 AGATCGC 20 7.021745E-4 45.000004 21 GATAATA 30 2.15806E-6 45.000004 9 ACGCCCA 30 2.15806E-6 45.000004 35 TCACCGT 20 7.021745E-4 45.000004 17 AGTCATC 20 7.021745E-4 45.000004 36 ATTAGCG 20 7.021745E-4 45.000004 1 CGAGTTG 20 7.021745E-4 45.000004 20 CAAGTAC 20 7.021745E-4 45.000004 30 >>END_MODULE