SRR3548464_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548464_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	481869
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCCCAGAGTTTCGTATGCCGTCTTCTGCT	4271	0.8863404784287846	TruSeq Adapter, Index 15 (95% over 23bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1779	0.36918747626429593	No Hit
AAACTGTCTCTTATACACATCTGACGCCCAGAGTTTCGTATGCCGTCTTCT	939	0.1948662395796368	No Hit
TGCCCCGGGAATGATACCTGTCTCTTATACACATCTGACGCCCAGAGTTTC	918	0.1905082086625203	No Hit
CCTGTCTCTTATACACATCTGACGCCCAGAGTTTCGTATGCCGTCTTCTGC	711	0.14755047533665788	TruSeq Adapter, Index 14 (95% over 21bp)
TGCCCCGGGAATGATACGGCTGTCTCTTATACACATCTGACGCCCAGAGTT	635	0.1317785539223316	No Hit
AAAAACTGTCTCTTATACACATCTGACGCCCAGAGTTTCGTATGCCGTCTT	625	0.12970330110465708	No Hit
GCGAGCGGGATTCCTTTGTACTCTCACCTCTCACTTCTCTCTCCTCTTCCC	590	0.12243991624279627	No Hit
AATCTGTCTCTTATACACATCTGACGCCCAGAGTTTCGTATGCCGTCTTCT	558	0.11579910722623783	No Hit
AGCCCAGGGAATGATACCTGTCTCTTATACACATCTGACGCCCAGAGTTTC	514	0.10666799482846998	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGATCAC	20	7.029204E-4	45.0	39
GAGTGCG	20	7.029204E-4	45.0	1
CAGCGCG	25	3.887422E-5	45.0	1
AACCGCG	25	3.887422E-5	45.0	1
TCGTTGA	50	2.1827873E-11	45.0	24
TCCATAC	25	3.887422E-5	45.0	33
CGTATAG	70	0.0	45.0	1
CGCGGGT	45	3.8380676E-10	45.0	4
CGTGCGG	55	1.8189894E-12	45.0	2
CCGATAC	20	7.029204E-4	45.0	37
GAGTCCC	25	3.887422E-5	45.0	9
TGGACGG	20	7.029204E-4	45.0	2
GCGCGAC	40	6.8012014E-9	45.0	9
CGGCATG	20	7.029204E-4	45.0	6
GGCCGTA	25	3.887422E-5	45.0	42
CGGCAGA	20	7.029204E-4	45.0	15
CACGCTA	20	7.029204E-4	45.0	20
CGACCTC	40	6.8012014E-9	45.0	12
CGTTCGC	20	7.029204E-4	45.0	18
TCGGCGG	25	3.887422E-5	45.0	2