SRR3548460_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548460_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	296046
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AATGATACCTGTCTCTTATACACATCTGACGCGCCTTTCATCGTATGCCGT	5318	1.7963424602933327	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCGCCTTTCATCGTATGCC	5276	1.782155475838214	No Hit
AATCTGTCTCTTATACACATCTGACGCGCCTTTCATCGTATGCCGTCTTCT	4904	1.6564993278071654	No Hit
CTGTCTCTTATACACATCTGACGCGCCTTTCATCGTATGCCGTCTTCTGCT	1994	0.6735439762739573	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1882	0.6357120177269748	No Hit
AATGACTGTCTCTTATACACATCTGACGCGCCTTTCATCGTATGCCGTCTT	1285	0.434054167257791	No Hit
AATGATCTGTCTCTTATACACATCTGACGCGCCTTTCATCGTATGCCGTCT	1051	0.35501239672213103	No Hit
AATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGCCTTTCATC	986	0.33305634935111433	No Hit
AACTGTCTCTTATACACATCTGACGCGCCTTTCATCGTATGCCGTCTTCTG	933	0.31515372611013154	No Hit
AATGATACGGCGACTGTCTCTTATACACATCTGACGCGCCTTTCATCGTAT	809	0.2732683434331151	No Hit
AAACTGTCTCTTATACACATCTGACGCGCCTTTCATCGTATGCCGTCTTCT	800	0.27022827533558974	No Hit
AAAAACTGTCTCTTATACACATCTGACGCGCCTTTCATCGTATGCCGTCTT	539	0.1820663005073536	No Hit
CCTGTCTCTTATACACATCTGACGCGCCTTTCATCGTATGCCGTCTTCTGC	523	0.1766617350006418	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	425	0.14355877127203207	No Hit
AATGCTGTCTCTTATACACATCTGACGCGCCTTTCATCGTATGCCGTCTTC	367	0.12396722131020178	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	346	0.11687372908264257	No Hit
AAAAAACTGTCTCTTATACACATCTGACGCGCCTTTCATCGTATGCCGTCT	315	0.10640238341338847	No Hit
ACCTGTCTCTTATACACATCTGACGCGCCTTTCATCGTATGCCGTCTTCTG	314	0.10606459806921899	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGTTGG	20	7.024793E-4	45.0	2
GCCCATA	20	7.024793E-4	45.0	25
GGTACGA	20	7.024793E-4	45.0	9
ACGCCTC	20	7.024793E-4	45.0	45
CTCGTCA	20	7.024793E-4	45.0	36
GTATTCG	20	7.024793E-4	45.0	14
ATTAGCG	20	7.024793E-4	45.0	1
TTAGCGG	50	2.1827873E-11	45.0	2
CTATCAT	25	3.8837665E-5	45.0	27
GCGCGAC	20	7.024793E-4	45.0	9
ATTACGG	25	3.8837665E-5	45.0	2
ATTACCC	20	7.024793E-4	45.0	14
CCTACCG	20	7.024793E-4	45.0	1
CCAGCGG	50	2.1827873E-11	45.0	2
ATTCGGA	20	7.024793E-4	45.0	16
CGTCTAC	20	7.024793E-4	45.0	40
CGATTGG	25	3.8837665E-5	45.0	2
ATATGCG	20	7.024793E-4	45.0	1
CGTTCTA	20	7.024793E-4	45.0	27
CCTAAGG	40	6.7848305E-9	45.0	2