SRR3548459_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548459_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	302734
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AATGATACGGCTGTCTCTTATACACATCTGACGCGCCTTTCATCGTATGCC	6101	2.015300560888437	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCGCCTTTCATCGTATGCCGT	5817	1.9214888317797143	No Hit
AATCTGTCTCTTATACACATCTGACGCGCCTTTCATCGTATGCCGTCTTCT	5373	1.7748254242998802	No Hit
CTGTCTCTTATACACATCTGACGCGCCTTTCATCGTATGCCGTCTTCTGCT	2182	0.7207647637860299	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1960	0.6474330600461131	No Hit
AATGACTGTCTCTTATACACATCTGACGCGCCTTTCATCGTATGCCGTCTT	1458	0.4816109191567514	No Hit
AATGATCTGTCTCTTATACACATCTGACGCGCCTTTCATCGTATGCCGTCT	1212	0.40035146366116786	No Hit
AATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGCCTTTCATC	1010	0.3336262197176399	No Hit
AACTGTCTCTTATACACATCTGACGCGCCTTTCATCGTATGCCGTCTTCTG	1007	0.33263525074818157	No Hit
AATGATACGGCGACTGTCTCTTATACACATCTGACGCGCCTTTCATCGTAT	900	0.29729069083750087	No Hit
AAACTGTCTCTTATACACATCTGACGCGCCTTTCATCGTATGCCGTCTTCT	845	0.2791229263974314	No Hit
AAAAACTGTCTCTTATACACATCTGACGCGCCTTTCATCGTATGCCGTCTT	583	0.1925783030647367	No Hit
CCTGTCTCTTATACACATCTGACGCGCCTTTCATCGTATGCCGTCTTCTGC	571	0.18861442718690336	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	452	0.14930599139838935	No Hit
AATGCTGTCTCTTATACACATCTGACGCGCCTTTCATCGTATGCCGTCTTC	401	0.13245951891759764	No Hit
AACCTGTCTCTTATACACATCTGACGCGCCTTTCATCGTATGCCGTCTTCT	342	0.11297046251825035	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	319	0.1053730337524031	No Hit
AAAAAACTGTCTCTTATACACATCTGACGCGCCTTTCATCGTATGCCGTCT	318	0.10504271076258365	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTAGACG	30	2.1601845E-6	45.000004	1
ACAAACG	35	1.2079727E-7	45.000004	1
CTCGTCA	30	2.1601845E-6	45.000004	36
ATTACGG	35	1.2079727E-7	45.000004	2
TTCACTA	30	2.1601845E-6	45.000004	27
TCGGGCT	35	1.2079727E-7	45.000004	5
GCACCGT	30	2.1601845E-6	45.000004	24
AATGCGG	35	1.2079727E-7	45.000004	2
AAGCACG	35	1.2079727E-7	45.000004	1
CGAGGGC	35	1.2079727E-7	45.000004	4
TCGTCAT	30	2.1601845E-6	45.000004	37
TGGGACG	30	2.1601845E-6	45.000004	6
TACAGCG	35	1.2079727E-7	45.000004	1
CCGCACG	30	2.1601845E-6	45.000004	1
GTAGTGC	30	2.1601845E-6	45.000004	29
GCCCCGG	20	7.025044E-4	45.0	2
CTATGCG	20	7.025044E-4	45.0	1
AATCCGC	20	7.025044E-4	45.0	35
CGAACAG	20	7.025044E-4	45.0	1
ACACGAC	75	0.0	45.0	26