##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3548459_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 302734 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.59558886679395 31.0 31.0 34.0 30.0 34.0 2 31.783598802909484 31.0 31.0 34.0 30.0 34.0 3 31.937238631934306 33.0 31.0 34.0 30.0 34.0 4 35.61778326847992 37.0 35.0 37.0 33.0 37.0 5 35.36017758163933 37.0 35.0 37.0 33.0 37.0 6 35.38412599840124 37.0 35.0 37.0 33.0 37.0 7 35.35322428270363 37.0 35.0 37.0 33.0 37.0 8 35.486833325625796 37.0 35.0 37.0 33.0 37.0 9 37.24244716483778 39.0 37.0 39.0 34.0 39.0 10 36.73641546704368 39.0 37.0 39.0 32.0 39.0 11 36.73340622460642 39.0 35.0 39.0 32.0 39.0 12 36.723866496660435 39.0 35.0 39.0 32.0 39.0 13 36.7687606942068 39.0 35.0 39.0 32.0 39.0 14 37.830874629212445 39.0 37.0 41.0 33.0 41.0 15 37.94356101395945 40.0 37.0 41.0 33.0 41.0 16 37.72349653491184 39.0 37.0 41.0 32.0 41.0 17 37.66681641308872 39.0 37.0 41.0 32.0 41.0 18 37.52223073721485 39.0 36.0 41.0 32.0 41.0 19 37.46113419701784 39.0 36.0 41.0 32.0 41.0 20 37.52275595076866 39.0 36.0 41.0 32.0 41.0 21 37.56526521632853 39.0 36.0 41.0 32.0 41.0 22 37.500525213553814 39.0 36.0 41.0 32.0 41.0 23 37.3088090534925 39.0 36.0 41.0 32.0 41.0 24 37.20422218845587 39.0 36.0 40.0 31.0 41.0 25 37.26706944049892 39.0 36.0 41.0 32.0 41.0 26 37.18290974915272 39.0 36.0 41.0 32.0 41.0 27 37.16801878877166 39.0 36.0 41.0 31.0 41.0 28 37.061189030634154 39.0 36.0 41.0 31.0 41.0 29 36.87894323069097 39.0 35.0 40.0 31.0 41.0 30 36.97684435841366 39.0 36.0 40.0 31.0 41.0 31 36.8181538908745 39.0 35.0 40.0 31.0 41.0 32 36.739470954699506 39.0 35.0 40.0 30.0 41.0 33 36.72625142864693 39.0 35.0 40.0 31.0 41.0 34 36.630414819610614 39.0 35.0 40.0 30.0 41.0 35 36.530356682764406 39.0 35.0 40.0 30.0 41.0 36 36.50006276136806 39.0 35.0 40.0 30.0 41.0 37 36.39724973078676 39.0 35.0 40.0 30.0 41.0 38 36.33440247874371 39.0 35.0 40.0 30.0 41.0 39 36.264284817694744 39.0 35.0 40.0 30.0 41.0 40 36.012611731751306 39.0 35.0 40.0 29.0 41.0 41 36.0073199574544 39.0 35.0 40.0 29.0 41.0 42 35.878639333540335 38.0 35.0 40.0 28.0 41.0 43 35.86057727245701 38.0 35.0 40.0 28.0 41.0 44 35.8379072056657 38.0 35.0 40.0 28.0 41.0 45 35.53747844642491 38.0 35.0 40.0 27.0 41.0 46 35.305023552029176 38.0 34.0 40.0 26.0 41.0 47 35.21802638620043 38.0 34.0 40.0 26.0 41.0 48 35.14559646422272 38.0 34.0 40.0 26.0 41.0 49 34.98026980781808 38.0 34.0 40.0 26.0 41.0 50 34.917851975661804 38.0 34.0 40.0 26.0 41.0 51 33.421614354515846 36.0 31.0 40.0 20.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 3.0 13 1.0 14 8.0 15 7.0 16 29.0 17 70.0 18 147.0 19 347.0 20 595.0 21 992.0 22 1372.0 23 1633.0 24 1980.0 25 2339.0 26 2611.0 27 3027.0 28 3674.0 29 4651.0 30 5977.0 31 7849.0 32 10340.0 33 13422.0 34 18906.0 35 24215.0 36 28663.0 37 40357.0 38 62073.0 39 67441.0 40 5.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 18.636492762623295 40.09724708820284 16.448433278059284 24.817826871114576 2 18.386107936340153 40.22574273124261 17.52958042373833 23.858568908678908 3 18.809582009288683 30.82475044098119 26.729406013199707 23.63626153653042 4 24.34975919454042 29.596609564832494 17.762788454550858 28.290842786076226 5 16.907582233908318 38.05915424101687 18.840302047341893 26.19296147773293 6 20.129882999597008 32.55068806278779 24.769930037590758 22.549498900024446 7 74.69197381199336 12.243421617657745 8.133212655334386 4.931391915014501 8 76.40635012915628 5.599965646409059 5.2177819471879605 12.775902277246692 9 73.87508505816987 9.142019066242971 10.772823666981575 6.210072208605574 10 29.094188297317114 41.48823719833253 14.553039962475308 14.864534541875047 11 19.916494348173643 26.32740293458944 34.39686325288868 19.359239464348242 12 22.32553991292686 23.074051807857725 37.782673898537986 16.817734380677425 13 23.476715532447628 27.769923431130962 29.06974439607048 19.683616640350934 14 16.48807203683762 28.665759379521294 36.005866536299195 18.840302047341893 15 15.861119002160311 31.43353571121843 28.587803153923907 24.117542132697352 16 17.94149319204318 30.577999167586068 31.00510679342261 20.475400846948148 17 16.829956331300746 30.66091023803075 29.747567171179977 22.76156625948853 18 19.517794499461573 29.903479622374757 26.14473432121929 24.433991556944378 19 18.25166647948364 33.27046185760437 30.531093303031703 17.94677835988029 20 19.94853567818613 33.79270250450891 26.167526607516827 20.09123520978813 21 18.893153725713002 29.261992376145397 28.43717587056624 23.40767802757536 22 19.69187471509642 31.051021689007513 29.000376568208395 20.256727027687674 23 20.47242794003977 28.96701394623663 25.29349197645458 25.267066137269023 24 16.614585741938466 34.85006639492095 25.931345669795924 22.60400219334465 25 19.410109204780433 29.115989614645198 27.24603116927732 24.227870011297046 26 22.770484980213652 31.739414799791238 23.05918727331585 22.430912946679264 27 17.615464401091387 28.427596503861473 28.229733032959626 25.72720606208751 28 23.797459155562308 27.622599377671484 26.587697450567166 21.992244016199038 29 19.737459287691507 30.562473987064553 25.61919044441655 24.080876280827393 30 22.320585068079566 25.526369684277284 24.644737624449185 27.50830762319396 31 21.93873169184829 29.014580456770627 26.03209418169086 23.01459366969022 32 19.349329774653658 26.235903466409454 27.383775856032027 27.03099090290486 33 23.061829857234404 25.943897943409066 28.54056696637973 22.453705232976805 34 18.117885668606764 25.004129037372742 27.076245152510126 29.80174014151037 35 20.56227579327066 27.528457325572948 27.320353841986694 24.5889130391697 36 18.71610060316978 24.907014078365826 31.14285148017732 25.23403383828708 37 19.18383795675411 27.187894323069095 26.787873182397746 26.840394537779037 38 20.37927685691069 26.49586765939736 33.181604973342935 19.94325051034902 39 18.97144027430021 23.937516103245756 31.747012228557082 25.344031393896955 40 21.440604623200564 29.920326094855547 26.877060389649 21.762008892294883 41 18.767300666591794 24.64969246929648 31.992772532982748 24.590234331128975 42 23.96922711026842 27.492452119682625 24.938394762398673 23.59992600765028 43 20.879385863497326 24.597831759894824 28.328829929905464 26.193952446702383 44 21.78314956364333 23.07074857795953 26.748234423619415 28.397867434777723 45 25.917802427213328 24.718399651178924 28.00280113895367 21.36099678265408 46 18.523522300105043 23.92099995375478 35.10507574306156 22.450402003078608 47 21.083195148215925 26.596285848302472 27.03693671672161 25.28358228675999 48 19.751002530274103 22.53463436548257 33.60673066124056 24.107632443002768 49 21.592883521507332 23.017566576598597 29.807355632337302 25.582194269556773 50 19.5131699776041 22.13494354780104 27.940039770887974 30.411846703706885 51 18.659285048920836 21.59321384449715 33.93408074415163 25.813420362430385 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 2283.0 1 1800.5 2 1318.0 3 914.5 4 511.0 5 480.0 6 449.0 7 493.0 8 537.0 9 591.5 10 646.0 11 707.0 12 768.0 13 788.5 14 809.0 15 988.0 16 1167.0 17 1273.5 18 1380.0 19 1305.5 20 1231.0 21 1376.5 22 1522.0 23 1735.0 24 1948.0 25 2166.0 26 2581.0 27 2778.0 28 3234.5 29 3691.0 30 4489.0 31 5287.0 32 5828.0 33 6369.0 34 7097.5 35 7826.0 36 8739.0 37 9652.0 38 10237.5 39 10823.0 40 11599.0 41 12375.0 42 14028.5 43 15682.0 44 24994.0 45 34306.0 46 34932.0 47 35558.0 48 34687.5 49 33817.0 50 31056.5 51 28296.0 52 24706.5 53 21117.0 54 18470.5 55 15824.0 56 13453.0 57 11082.0 58 10155.0 59 9228.0 60 8494.5 61 7761.0 62 6659.5 63 5558.0 64 4487.5 65 3417.0 66 2790.5 67 2164.0 68 1714.5 69 1265.0 70 1065.5 71 866.0 72 625.5 73 385.0 74 390.5 75 268.0 76 140.0 77 94.0 78 48.0 79 37.0 80 26.0 81 23.0 82 20.0 83 14.5 84 9.0 85 7.0 86 5.0 87 5.5 88 6.0 89 4.0 90 2.0 91 1.5 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 302734.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 32.098145566735155 #Duplication Level Percentage of deduplicated Percentage of total 1 77.51924422673197 24.882239854129367 2 9.55316346272589 6.132776628987824 3 3.2416745564565925 3.1215522537937597 4 1.692874490593998 2.173525273011951 5 1.0507141975054541 1.686298863028269 6 0.7286049479273865 1.4032120607530043 7 0.5464537109455399 1.2278105531588788 8 0.42707775902523365 1.0966723262005589 9 0.37356440126785495 1.0791652077401284 >10 4.15140163833203 30.35635244141722 >50 0.6184909233112419 13.096645900361374 >100 0.08335734573745524 4.158105795847179 >500 0.004116412135182974 0.9576063474865724 >1k 0.006174618202774462 2.916421677115884 >5k 0.003087309101387231 5.711614816968031 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source AATGATACGGCTGTCTCTTATACACATCTGACGCGCCTTTCATCGTATGCC 6101 2.015300560888437 No Hit AATGATACCTGTCTCTTATACACATCTGACGCGCCTTTCATCGTATGCCGT 5817 1.9214888317797143 No Hit AATCTGTCTCTTATACACATCTGACGCGCCTTTCATCGTATGCCGTCTTCT 5373 1.7748254242998802 No Hit CTGTCTCTTATACACATCTGACGCGCCTTTCATCGTATGCCGTCTTCTGCT 2182 0.7207647637860299 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1960 0.6474330600461131 No Hit AATGACTGTCTCTTATACACATCTGACGCGCCTTTCATCGTATGCCGTCTT 1458 0.4816109191567514 No Hit AATGATCTGTCTCTTATACACATCTGACGCGCCTTTCATCGTATGCCGTCT 1212 0.40035146366116786 No Hit AATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGCCTTTCATC 1010 0.3336262197176399 No Hit AACTGTCTCTTATACACATCTGACGCGCCTTTCATCGTATGCCGTCTTCTG 1007 0.33263525074818157 No Hit AATGATACGGCGACTGTCTCTTATACACATCTGACGCGCCTTTCATCGTAT 900 0.29729069083750087 No Hit AAACTGTCTCTTATACACATCTGACGCGCCTTTCATCGTATGCCGTCTTCT 845 0.2791229263974314 No Hit AAAAACTGTCTCTTATACACATCTGACGCGCCTTTCATCGTATGCCGTCTT 583 0.1925783030647367 No Hit CCTGTCTCTTATACACATCTGACGCGCCTTTCATCGTATGCCGTCTTCTGC 571 0.18861442718690336 No Hit CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 452 0.14930599139838935 No Hit AATGCTGTCTCTTATACACATCTGACGCGCCTTTCATCGTATGCCGTCTTC 401 0.13245951891759764 No Hit AACCTGTCTCTTATACACATCTGACGCGCCTTTCATCGTATGCCGTCTTCT 342 0.11297046251825035 No Hit GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 319 0.1053730337524031 No Hit AAAAAACTGTCTCTTATACACATCTGACGCGCCTTTCATCGTATGCCGTCT 318 0.10504271076258365 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 3.3032298981944546E-4 0.0 0.0 0.8452965309479609 0.0 2 3.3032298981944546E-4 0.0 0.0 1.2770286786419762 0.0 3 3.3032298981944546E-4 0.0 0.0 2.1256284394881315 0.0 4 3.3032298981944546E-4 0.0 0.0 6.079264304637074 0.0 5 3.3032298981944546E-4 0.0 0.0 6.550304888119603 0.0 6 3.3032298981944546E-4 0.0 0.0 8.606235176755831 0.0 7 3.3032298981944546E-4 0.0 0.0 10.159083551897044 0.0 8 3.3032298981944546E-4 0.0 0.0 11.03774270481677 0.0 9 3.3032298981944546E-4 0.0 0.0 14.351542938685446 0.0 10 3.3032298981944546E-4 0.0 0.0 16.314652467182412 0.0 11 6.606459796388909E-4 0.0 0.0 20.076040352256435 0.0 12 6.606459796388909E-4 0.0 0.0 21.048511234284884 0.0 13 6.606459796388909E-4 0.0 0.0 21.53937119715658 0.0 14 6.606459796388909E-4 0.0 0.0 22.19968685380565 0.0 15 6.606459796388909E-4 0.0 0.0 22.6115996221105 0.0 16 6.606459796388909E-4 0.0 0.0 23.27885206154578 0.0 17 6.606459796388909E-4 0.0 0.0 24.127451822391937 0.0 18 6.606459796388909E-4 0.0 0.0 25.64924983649012 0.0 19 6.606459796388909E-4 0.0 0.0 26.17941823515033 0.0 20 6.606459796388909E-4 0.0 0.0 26.771357032906778 0.0 21 6.606459796388909E-4 0.0 0.0 27.36990229045961 0.0 22 6.606459796388909E-4 0.0 0.0 27.976705622757933 0.0 23 6.606459796388909E-4 0.0 0.0 28.498615946672658 0.0 24 6.606459796388909E-4 0.0 0.0 28.87848738496502 0.0 25 6.606459796388909E-4 0.0 0.0 29.226647816234713 0.0 26 6.606459796388909E-4 0.0 0.0 29.563577265850547 0.0 27 6.606459796388909E-4 0.0 0.0 29.98044487900269 0.0 28 6.606459796388909E-4 0.0 0.0 30.3679137460609 0.0 29 6.606459796388909E-4 0.0 0.0 30.722680637126984 0.0 30 6.606459796388909E-4 0.0 0.0 31.274650353115277 0.0 31 6.606459796388909E-4 0.0 0.0 31.64956694656035 0.0 32 6.606459796388909E-4 0.0 0.0 32.020189341137765 0.0 33 6.606459796388909E-4 0.0 0.0 32.38519624488825 0.0 34 6.606459796388909E-4 0.0 0.0 32.73236570718849 0.0 35 6.606459796388909E-4 0.0 0.0 33.11388876042995 0.0 36 6.606459796388909E-4 0.0 0.0 33.47228920438405 0.0 37 6.606459796388909E-4 0.0 0.0 33.81384317585735 0.0 38 6.606459796388909E-4 0.0 0.0 34.169931358882714 0.0 39 6.606459796388909E-4 0.0 0.0 34.50851242344765 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTAGACG 30 2.1601845E-6 45.000004 1 ACAAACG 35 1.2079727E-7 45.000004 1 CTCGTCA 30 2.1601845E-6 45.000004 36 ATTACGG 35 1.2079727E-7 45.000004 2 TTCACTA 30 2.1601845E-6 45.000004 27 TCGGGCT 35 1.2079727E-7 45.000004 5 GCACCGT 30 2.1601845E-6 45.000004 24 AATGCGG 35 1.2079727E-7 45.000004 2 AAGCACG 35 1.2079727E-7 45.000004 1 CGAGGGC 35 1.2079727E-7 45.000004 4 TCGTCAT 30 2.1601845E-6 45.000004 37 TGGGACG 30 2.1601845E-6 45.000004 6 TACAGCG 35 1.2079727E-7 45.000004 1 CCGCACG 30 2.1601845E-6 45.000004 1 GTAGTGC 30 2.1601845E-6 45.000004 29 GCCCCGG 20 7.025044E-4 45.0 2 CTATGCG 20 7.025044E-4 45.0 1 AATCCGC 20 7.025044E-4 45.0 35 CGAACAG 20 7.025044E-4 45.0 1 ACACGAC 75 0.0 45.0 26 >>END_MODULE