SRR3548458_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548458_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	272154
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCTTGTGCCATCGTATGCCGTCTTCTGCT	3035	1.1151774363044453	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2013	0.739654754293525	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCTTGTGCCATCGTATGCC	1489	0.5471167059826422	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCTTGTGCCATCGTATGCCGT	1440	0.5291121938314337	No Hit
AATCTGTCTCTTATACACATCTGACGCTTGTGCCATCGTATGCCGTCTTCT	1343	0.49347060855251074	No Hit
AAACTGTCTCTTATACACATCTGACGCTTGTGCCATCGTATGCCGTCTTCT	851	0.31269060899343754	No Hit
AAAAACTGTCTCTTATACACATCTGACGCTTGTGCCATCGTATGCCGTCTT	650	0.23883536527113328	No Hit
CCTGTCTCTTATACACATCTGACGCTTGTGCCATCGTATGCCGTCTTCTGC	601	0.22083085311992473	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	510	0.1873939019819661	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	394	0.14477097525665616	No Hit
AAAAAACTGTCTCTTATACACATCTGACGCTTGTGCCATCGTATGCCGTCT	362	0.13301292650484653	No Hit
ACCTGTCTCTTATACACATCTGACGCTTGTGCCATCGTATGCCGTCTTCTG	330	0.12125487775303688	No Hit
AACTGTCTCTTATACACATCTGACGCTTGTGCCATCGTATGCCGTCTTCTG	314	0.11537585337713208	No Hit
AATGACTGTCTCTTATACACATCTGACGCTTGTGCCATCGTATGCCGTCTT	312	0.11464097533014396	No Hit
AACCTGTCTCTTATACACATCTGACGCTTGTGCCATCGTATGCCGTCTTCT	299	0.10986426802472128	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTCGTCA	35	1.2073542E-7	45.000004	36
TGCGGGC	35	1.2073542E-7	45.000004	4
ACGGGCG	35	1.2073542E-7	45.000004	5
CGTAGTG	35	1.2073542E-7	45.000004	28
CTAAACG	35	1.2073542E-7	45.000004	1
ACATCCG	45	3.8198777E-10	45.000004	1
CCACACG	35	1.2073542E-7	45.000004	1
GCGAGAC	25	3.882936E-5	45.0	21
CTGCTAC	20	7.023789E-4	45.0	41
TTCTACG	20	7.023789E-4	45.0	1
TTAGGCG	20	7.023789E-4	45.0	1
CGGAAAG	25	3.882936E-5	45.0	1
GTACCGG	40	6.7811925E-9	45.0	2
TCTTGCG	25	3.882936E-5	45.0	1
ACACGAC	25	3.882936E-5	45.0	26
CTCGTCC	20	7.023789E-4	45.0	37
CTCGTAG	25	3.882936E-5	45.0	1
TGCCACG	20	7.023789E-4	45.0	1
GCGGTCG	20	7.023789E-4	45.0	12
ACGCACA	20	7.023789E-4	45.0	37