##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3548458_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 272154 Sequences flagged as poor quality 0 Sequence length 51 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.65027153743836 31.0 31.0 34.0 30.0 34.0 2 31.858164862541063 33.0 31.0 34.0 30.0 34.0 3 32.04412207794117 33.0 31.0 34.0 30.0 34.0 4 35.72265702506669 37.0 35.0 37.0 33.0 37.0 5 35.480985030534185 37.0 35.0 37.0 33.0 37.0 6 34.86755660398157 37.0 35.0 37.0 32.0 37.0 7 35.27520080542634 37.0 35.0 37.0 33.0 37.0 8 35.66683201422724 37.0 35.0 37.0 33.0 37.0 9 37.343897205258784 39.0 37.0 39.0 34.0 39.0 10 36.88210718931193 39.0 37.0 39.0 33.0 39.0 11 36.930043284316966 39.0 37.0 39.0 33.0 39.0 12 36.97311081226071 39.0 37.0 39.0 33.0 39.0 13 36.909551209976705 39.0 37.0 39.0 33.0 39.0 14 38.035623213327746 40.0 37.0 41.0 33.0 41.0 15 38.087211652226316 40.0 37.0 41.0 33.0 41.0 16 37.92808850871198 40.0 37.0 41.0 33.0 41.0 17 37.9031467477972 39.0 37.0 41.0 33.0 41.0 18 37.84174401258111 39.0 37.0 41.0 33.0 41.0 19 37.80719372120197 39.0 36.0 41.0 33.0 41.0 20 37.74666916525203 39.0 36.0 41.0 33.0 41.0 21 37.74198799209271 39.0 36.0 41.0 33.0 41.0 22 37.72700382871462 39.0 36.0 41.0 33.0 41.0 23 37.60269553267635 39.0 36.0 41.0 33.0 41.0 24 37.48815376588255 39.0 36.0 41.0 32.0 41.0 25 37.52410399994121 39.0 36.0 41.0 32.0 41.0 26 37.47375383055182 39.0 36.0 41.0 32.0 41.0 27 37.42840450627219 39.0 36.0 41.0 32.0 41.0 28 37.35834490766258 39.0 36.0 41.0 32.0 41.0 29 37.16583258008333 39.0 36.0 41.0 31.0 41.0 30 37.1908368056321 39.0 36.0 41.0 32.0 41.0 31 37.11914945214841 39.0 36.0 41.0 31.0 41.0 32 37.041601446239994 39.0 36.0 41.0 31.0 41.0 33 36.81808828824857 39.0 36.0 41.0 31.0 41.0 34 36.86200827472681 39.0 36.0 41.0 31.0 41.0 35 36.74851370914997 39.0 35.0 41.0 30.0 41.0 36 36.74349816647927 39.0 35.0 41.0 31.0 41.0 37 36.627611572859486 39.0 35.0 40.0 30.0 41.0 38 36.47211872689727 39.0 35.0 40.0 30.0 41.0 39 36.45749832815244 39.0 35.0 40.0 30.0 41.0 40 36.36779911373708 39.0 35.0 40.0 30.0 41.0 41 36.380332458828455 39.0 35.0 40.0 30.0 41.0 42 36.28161996516678 39.0 35.0 40.0 30.0 41.0 43 36.22696708481227 39.0 35.0 40.0 30.0 41.0 44 36.191623125142385 39.0 35.0 40.0 30.0 41.0 45 35.96632053910653 39.0 35.0 40.0 29.0 41.0 46 35.80214510901916 38.0 35.0 40.0 29.0 41.0 47 35.70053719585235 38.0 35.0 40.0 28.0 41.0 48 35.61919721922147 38.0 35.0 40.0 28.0 41.0 49 35.51584397069306 38.0 35.0 40.0 27.0 41.0 50 35.435551195279146 38.0 35.0 40.0 27.0 41.0 51 34.14176532404448 37.0 33.0 40.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 5.0 12 1.0 13 2.0 14 2.0 15 6.0 16 21.0 17 53.0 18 153.0 19 265.0 20 520.0 21 799.0 22 1110.0 23 1386.0 24 1662.0 25 1898.0 26 1979.0 27 2339.0 28 2764.0 29 3514.0 30 4612.0 31 5822.0 32 8064.0 33 10766.0 34 15681.0 35 21552.0 36 26041.0 37 37759.0 38 58496.0 39 64872.0 40 9.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 17.21194617753184 35.540539547462096 19.879186049075155 27.368328225930906 2 20.300638609022833 34.70241113487217 20.993261168309118 24.00368908779588 3 20.25581104815656 33.03460540723267 21.911123848997256 24.798459695613513 4 20.23229495065294 32.725589188474174 19.29826495293106 27.743850907941827 5 17.486423128081896 36.39446783806227 18.676558125179128 27.442550908676704 6 19.118954709465964 38.592488076603686 19.982803853700478 22.30575336022987 7 79.25439273352588 8.310368394364955 7.057768763273735 5.377470108835439 8 81.28339102126002 6.292393277335625 5.160681084973948 7.2635346164304035 9 74.08966981929349 11.092984119285404 10.184307414184616 4.633038647236491 10 26.50153956950844 46.186717814178735 12.61454911557427 14.697193500738553 11 18.055586175474183 28.340939321119663 35.87931832712361 17.724156176282545 12 23.211490553142706 23.855243722304284 35.05588747547345 17.877378249079566 13 23.6873240885675 27.046084202326625 28.649955539878157 20.616636169227718 14 17.408526055101156 30.78551114442558 31.988506507345104 19.817456293128156 15 15.788119961492391 34.11561101435217 29.202583831213207 20.893685192942232 16 18.29405410172182 32.26555553105962 28.629011515539 20.811378851679564 17 17.389419225879465 31.932288336750513 29.30987602607347 21.368416411296547 18 18.84741727110386 29.075817368107764 27.845998956473174 24.230766404315204 19 18.805161783402045 34.070783453485895 28.80721944193361 18.316835321178452 20 20.355019584499953 31.675815898351665 28.39789236976124 19.57127214738714 21 19.870734951534793 31.225335655547966 26.983252129309143 21.920677263608106 22 18.168389955686852 30.169683341049552 28.694048222697443 22.96787848056615 23 19.3081858065654 30.17960419468389 26.589724935147014 23.922485063603695 24 15.666865083739353 33.26498967496344 27.703800054380977 23.36434518691623 25 18.79413861269722 31.194470777574463 26.85722054425068 23.154170065477633 26 20.62949653505001 31.990343702462575 25.846395790618548 21.53376397186887 27 17.827773980907867 30.253091999382704 26.794021032209702 25.125112987499726 28 19.541509586484125 27.974970053719584 31.43734797210403 21.046172387692263 29 20.558948242539152 29.75374236645429 28.16089419960758 21.526415191398986 30 22.330004335780476 27.400295420974892 27.809255054123767 22.460445189120865 31 19.879186049075155 29.481102611021704 28.590062979048625 22.049648360854516 32 24.248403477442917 27.591363713191797 25.793484571235403 22.366748238129883 33 20.5497622669518 26.90902944656334 28.244302857940724 24.296905428544132 34 19.580090683951 26.171946765434278 29.23822541649213 25.009737134122595 35 20.242215804287277 27.79198542001955 29.49837224512592 22.467426530567252 36 20.593854949771085 26.721268105557883 31.060722973022624 21.624153971648404 37 21.89863092219846 29.209932611683094 26.037831521858944 22.8536049442595 38 23.09280774855413 27.068130543736267 28.864907368622177 20.974154339087427 39 21.858947507661103 25.074038963234052 27.757446151811106 25.30956737729374 40 22.479919457366048 28.135173467962993 24.682348964189394 24.702558110481565 41 18.23158946772783 25.800833351705283 31.360920655217267 24.606656525349617 42 22.926357870911325 27.2948404212321 27.65640042035024 22.12240128750634 43 18.957648978152076 25.704564327549846 31.24701455793411 24.09077213636397 44 23.46759555251806 23.98017299029226 27.075846763229645 25.476384693960036 45 24.222315306774842 24.5890194522219 28.641871881361286 22.546793359641967 46 19.923646170917937 24.597470549762267 31.72468528847638 23.75419799084342 47 19.139898733805126 26.255355423767423 28.076383224203944 26.528362618223504 48 20.307252511445725 23.828420673589218 32.62123650580186 23.243090309163193 49 21.57748921566466 24.27485908713449 29.32567590408372 24.821975793117133 50 19.713838488502834 22.8473584808601 28.389073833197383 29.04972919743968 51 19.185093733694895 22.63975543258596 33.235594553083914 24.939556280635227 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 2363.0 1 1901.0 2 1439.0 3 995.5 4 552.0 5 542.5 6 533.0 7 596.0 8 659.0 9 760.0 10 861.0 11 916.5 12 972.0 13 1007.0 14 1042.0 15 1073.0 16 1104.0 17 1118.5 18 1133.0 19 1273.5 20 1414.0 21 1303.5 22 1193.0 23 1448.0 24 1703.0 25 1832.5 26 2586.0 27 3210.0 28 3620.0 29 4030.0 30 4934.0 31 5838.0 32 6163.0 33 6488.0 34 7360.5 35 8233.0 36 8801.5 37 9370.0 38 9749.0 39 10128.0 40 10866.5 41 11605.0 42 13778.0 43 15951.0 44 19886.5 45 23822.0 46 26048.5 47 28275.0 48 30364.5 49 32454.0 50 28878.0 51 25302.0 52 22701.5 53 20101.0 54 17178.5 55 14256.0 56 12482.0 57 10708.0 58 9097.5 59 7487.0 60 6724.5 61 5962.0 62 5015.5 63 4069.0 64 3524.5 65 2980.0 66 2395.5 67 1811.0 68 1531.0 69 1251.0 70 976.5 71 702.0 72 588.5 73 475.0 74 393.0 75 245.0 76 179.0 77 132.0 78 85.0 79 64.5 80 44.0 81 41.0 82 38.0 83 41.0 84 44.0 85 26.0 86 8.0 87 6.0 88 4.0 89 2.5 90 1.0 91 0.5 92 0.0 93 0.5 94 1.0 95 1.0 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 272154.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 37.06009554340242 #Duplication Level Percentage of deduplicated Percentage of total 1 76.12098026724195 28.210508015614366 2 10.406997302205527 7.71368628679336 3 3.6170247318540376 4.021418464360805 4 1.8359997743576426 2.7216930822143803 5 1.1669997005356192 2.1624560200486034 6 0.8069997908429074 1.7944493611286347 7 0.6299998366864428 1.6343497897949242 8 0.46499987945860094 1.3786351968325086 9 0.39799989682692427 1.3274922782403105 >10 4.136998927570314 32.406080344469345 >50 0.34299991108451 8.148401094826827 >100 0.06299998366858346 4.058820611749827 >500 0.003999998963084664 0.9680094446576467 >1k 0.004999998703855831 3.4540000092684786 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CTGTCTCTTATACACATCTGACGCTTGTGCCATCGTATGCCGTCTTCTGCT 3035 1.1151774363044453 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 2013 0.739654754293525 No Hit AATGATACGGCTGTCTCTTATACACATCTGACGCTTGTGCCATCGTATGCC 1489 0.5471167059826422 No Hit AATGATACCTGTCTCTTATACACATCTGACGCTTGTGCCATCGTATGCCGT 1440 0.5291121938314337 No Hit AATCTGTCTCTTATACACATCTGACGCTTGTGCCATCGTATGCCGTCTTCT 1343 0.49347060855251074 No Hit AAACTGTCTCTTATACACATCTGACGCTTGTGCCATCGTATGCCGTCTTCT 851 0.31269060899343754 No Hit AAAAACTGTCTCTTATACACATCTGACGCTTGTGCCATCGTATGCCGTCTT 650 0.23883536527113328 No Hit CCTGTCTCTTATACACATCTGACGCTTGTGCCATCGTATGCCGTCTTCTGC 601 0.22083085311992473 No Hit CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 510 0.1873939019819661 No Hit GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 394 0.14477097525665616 No Hit AAAAAACTGTCTCTTATACACATCTGACGCTTGTGCCATCGTATGCCGTCT 362 0.13301292650484653 No Hit ACCTGTCTCTTATACACATCTGACGCTTGTGCCATCGTATGCCGTCTTCTG 330 0.12125487775303688 No Hit AACTGTCTCTTATACACATCTGACGCTTGTGCCATCGTATGCCGTCTTCTG 314 0.11537585337713208 No Hit AATGACTGTCTCTTATACACATCTGACGCTTGTGCCATCGTATGCCGTCTT 312 0.11464097533014396 No Hit AACCTGTCTCTTATACACATCTGACGCTTGTGCCATCGTATGCCGTCTTCT 299 0.10986426802472128 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 1.2033628019430176 0.0 2 0.0 0.0 0.0 1.6505360935352777 0.0 3 0.0 0.0 0.0 2.263424384723355 0.0 4 0.0 0.0 0.0 5.129448767976954 0.0 5 0.0 0.0 0.0 5.54355254745475 0.0 6 0.0 0.0 0.0 7.621787664337103 0.0 7 0.0 0.0 0.0 9.214635831183815 0.0 8 0.0 0.0 0.0 10.383459364918393 0.0 9 0.0 0.0 0.0 12.30075618951035 0.0 10 0.0 0.0 0.0 14.513106549968033 0.0 11 0.0 0.0 0.0 16.94996215378058 0.0 12 0.0 0.0 0.0 18.093064955870574 0.0 13 0.0 0.0 0.0 18.5545683693791 0.0 14 0.0 0.0 0.0 19.093601416844873 0.0 15 0.0 0.0 0.0 19.513951659722068 0.0 16 0.0 0.0 0.0 20.341424340630674 0.0 17 0.0 0.0 0.0 21.387523240518235 0.0 18 0.0 0.0 0.0 22.959794822049282 0.0 19 0.0 0.0 0.0 23.582236527848202 0.0 20 3.6743902349405116E-4 0.0 0.0 24.289924087097745 0.0 21 3.6743902349405116E-4 0.0 0.0 24.96784908544427 0.0 22 3.6743902349405116E-4 0.0 0.0 25.760415059120938 0.0 23 3.6743902349405116E-4 0.0 0.0 26.489414081733138 0.0 24 3.6743902349405116E-4 0.0 0.0 27.01485188532963 0.0 25 3.6743902349405116E-4 0.0 0.0 27.45871822571044 0.0 26 3.6743902349405116E-4 0.0 0.0 27.900379931950294 0.0 27 3.6743902349405116E-4 0.0 0.0 28.458519808637757 0.0 28 3.6743902349405116E-4 0.0 0.0 28.968892612270995 0.0 29 3.6743902349405116E-4 0.0 0.0 29.486981635397605 0.0 30 3.6743902349405116E-4 0.0 0.0 30.25897102375861 0.0 31 3.6743902349405116E-4 0.0 0.0 30.744725412817743 0.0 32 3.6743902349405116E-4 0.0 0.0 31.211005533631695 0.0 33 3.6743902349405116E-4 0.0 0.0 31.668099678858294 0.0 34 3.6743902349405116E-4 0.0 0.0 32.11380321435658 0.0 35 3.6743902349405116E-4 0.0 0.0 32.59331114001631 0.0 36 3.6743902349405116E-4 0.0 0.0 33.05995869985376 0.0 37 3.6743902349405116E-4 0.0 0.0 33.532117845043615 0.0 38 3.6743902349405116E-4 0.0 0.0 33.98774223417624 0.0 39 3.6743902349405116E-4 0.0 0.0 34.43675272088597 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTCGTCA 35 1.2073542E-7 45.000004 36 TGCGGGC 35 1.2073542E-7 45.000004 4 ACGGGCG 35 1.2073542E-7 45.000004 5 CGTAGTG 35 1.2073542E-7 45.000004 28 CTAAACG 35 1.2073542E-7 45.000004 1 ACATCCG 45 3.8198777E-10 45.000004 1 CCACACG 35 1.2073542E-7 45.000004 1 GCGAGAC 25 3.882936E-5 45.0 21 CTGCTAC 20 7.023789E-4 45.0 41 TTCTACG 20 7.023789E-4 45.0 1 TTAGGCG 20 7.023789E-4 45.0 1 CGGAAAG 25 3.882936E-5 45.0 1 GTACCGG 40 6.7811925E-9 45.0 2 TCTTGCG 25 3.882936E-5 45.0 1 ACACGAC 25 3.882936E-5 45.0 26 CTCGTCC 20 7.023789E-4 45.0 37 CTCGTAG 25 3.882936E-5 45.0 1 TGCCACG 20 7.023789E-4 45.0 1 GCGGTCG 20 7.023789E-4 45.0 12 ACGCACA 20 7.023789E-4 45.0 37 >>END_MODULE