SRR3548457_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548457_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	280004
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCTTGTGCCATCGTATGCCGTCTTCTGCT	3269	1.1674833216668334	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1939	0.6924901072841817	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCTTGTGCCATCGTATGCC	1657	0.5917772603248524	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCTTGTGCCATCGTATGCCGT	1618	0.5778488878730303	No Hit
AATCTGTCTCTTATACACATCTGACGCTTGTGCCATCGTATGCCGTCTTCT	1451	0.5182068827588178	No Hit
AAACTGTCTCTTATACACATCTGACGCTTGTGCCATCGTATGCCGTCTTCT	995	0.3553520663990515	No Hit
AAAAACTGTCTCTTATACACATCTGACGCTTGTGCCATCGTATGCCGTCTT	768	0.2742817959743432	No Hit
CCTGTCTCTTATACACATCTGACGCTTGTGCCATCGTATGCCGTCTTCTGC	635	0.22678247453607803	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	531	0.18964014799788576	No Hit
AATGACTGTCTCTTATACACATCTGACGCTTGTGCCATCGTATGCCGTCTT	403	0.14392651533549522	No Hit
AAAAAACTGTCTCTTATACACATCTGACGCTTGTGCCATCGTATGCCGTCT	379	0.13535520921129698	No Hit
AACTGTCTCTTATACACATCTGACGCTTGTGCCATCGTATGCCGTCTTCTG	365	0.13035528063884802	No Hit
ACCTGTCTCTTATACACATCTGACGCTTGTGCCATCGTATGCCGTCTTCTG	356	0.12714104084227368	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	352	0.12571248982157396	No Hit
AACCTGTCTCTTATACACATCTGACGCTTGTGCCATCGTATGCCGTCTTCT	333	0.11892687247325039	No Hit
TACCTGTCTCTTATACACATCTGACGCTTGTGCCATCGTATGCCGTCTTCT	288	0.1028556734903787	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CATGGCA	25	3.8832233E-5	45.000004	31
TTAGGCG	25	3.8832233E-5	45.000004	1
TCACCGG	30	2.1596006E-6	45.000004	2
GATGTCG	25	3.8832233E-5	45.000004	10
TACCACG	25	3.8832233E-5	45.000004	1
CGAAAGT	25	3.8832233E-5	45.000004	37
ACCGCGC	25	3.8832233E-5	45.000004	35
GACCGAA	30	2.1596006E-6	45.000004	9
CACGATG	25	3.8832233E-5	45.000004	1
CGACACG	30	2.1596006E-6	45.000004	1
TTATCGG	25	3.8832233E-5	45.000004	2
TCGGCGG	25	3.8832233E-5	45.000004	2
AGTGCGC	25	3.8832233E-5	45.000004	13
TCTACGG	30	2.1596006E-6	45.000004	2
CGCTAGG	25	3.8832233E-5	45.000004	2
GCTTAGG	50	2.1827873E-11	45.000004	2
CGGGCAA	25	3.8832233E-5	45.000004	6
TATTAGC	25	3.8832233E-5	45.000004	15
CGTACTG	30	2.1596006E-6	45.000004	1
CATAACG	30	2.1596006E-6	45.000004	1