SRR3548454_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548454_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	530241
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCTAGCAGAGTCGTATGCCGTCTTCTGCT	1589	0.29967505341910566	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1132	0.21348782911921182	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCTAGCAGAGTCGTATGCC	983	0.18538739931465126	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCTAGCAGAGTCGTATGCCGT	943	0.17784365976980276	No Hit
AATCTGTCTCTTATACACATCTGACGCTAGCAGAGTCGTATGCCGTCTTCT	939	0.17708928581531794	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	837	0.15785274997595433	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGCATC	20	7.029844E-4	45.000004	32
GATCGTG	20	7.029844E-4	45.000004	24
CGAAATA	20	7.029844E-4	45.000004	42
CGAGTCT	20	7.029844E-4	45.000004	31
CGAGTAG	35	1.2102646E-7	45.000004	1
TTTACGG	20	7.029844E-4	45.000004	2
CGAAACG	40	6.8030204E-9	45.000004	1
GCGAATT	20	7.029844E-4	45.000004	21
TCCGAAT	20	7.029844E-4	45.000004	31
GACCGTT	45	3.8380676E-10	45.000004	28
CGACAGT	20	7.029844E-4	45.000004	44
ATCACGC	45	3.8380676E-10	45.000004	42
ATCGTGA	20	7.029844E-4	45.000004	25
TAGCACG	45	3.8380676E-10	45.000004	1
GTTACGG	45	3.8380676E-10	45.000004	2
ACGTGCG	20	7.029844E-4	45.000004	1
TCGTCAC	35	1.2102646E-7	45.000004	18
GTACTGC	20	7.029844E-4	45.000004	9
TCATACG	20	7.029844E-4	45.000004	1
CAATCGT	20	7.029844E-4	45.000004	20