##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3548447_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 260372 Sequences flagged as poor quality 0 Sequence length 51 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.744046978937828 31.0 31.0 34.0 30.0 34.0 2 31.949195766057795 33.0 31.0 34.0 30.0 34.0 3 32.072676785522255 34.0 31.0 34.0 30.0 34.0 4 35.72836556926244 37.0 35.0 37.0 33.0 37.0 5 35.51673375017283 37.0 35.0 37.0 33.0 37.0 6 35.53061773155331 37.0 35.0 37.0 33.0 37.0 7 35.50697079563086 37.0 35.0 37.0 33.0 37.0 8 35.57483907639838 37.0 35.0 37.0 35.0 37.0 9 37.23583949118953 39.0 37.0 39.0 34.0 39.0 10 36.89379426359209 39.0 37.0 39.0 33.0 39.0 11 36.90405650377153 39.0 37.0 39.0 33.0 39.0 12 36.774503402823655 39.0 35.0 39.0 33.0 39.0 13 36.78847187869663 39.0 35.0 39.0 33.0 39.0 14 37.86744734456854 40.0 37.0 41.0 33.0 41.0 15 37.933944510162384 40.0 37.0 41.0 33.0 41.0 16 37.791018235447744 40.0 36.0 41.0 33.0 41.0 17 37.731434255603524 39.0 36.0 41.0 33.0 41.0 18 37.615703685496136 39.0 36.0 41.0 33.0 41.0 19 37.63761848432243 39.0 36.0 41.0 32.0 41.0 20 37.622052294409535 39.0 36.0 41.0 32.0 41.0 21 37.58234372359547 39.0 36.0 41.0 32.0 41.0 22 37.555562810133196 39.0 36.0 41.0 32.0 41.0 23 37.43183214785 39.0 36.0 41.0 32.0 41.0 24 37.3536363357043 39.0 36.0 41.0 32.0 41.0 25 37.2673021676678 39.0 36.0 41.0 32.0 41.0 26 37.25401732905228 39.0 35.0 41.0 32.0 41.0 27 37.14284946153964 39.0 35.0 41.0 32.0 41.0 28 36.96300293426329 39.0 35.0 41.0 31.0 41.0 29 36.816620066673835 39.0 35.0 41.0 31.0 41.0 30 36.78935138955033 39.0 35.0 41.0 31.0 41.0 31 36.74436575361406 39.0 35.0 40.0 31.0 41.0 32 36.66123085431613 39.0 35.0 40.0 30.0 41.0 33 36.603467346719306 39.0 35.0 40.0 30.0 41.0 34 36.603905181816785 39.0 35.0 40.0 30.0 41.0 35 36.461578049867114 39.0 35.0 40.0 30.0 41.0 36 36.39528443918701 39.0 35.0 40.0 30.0 41.0 37 36.279292704284636 39.0 35.0 40.0 30.0 41.0 38 36.222785092098995 38.0 35.0 40.0 30.0 41.0 39 36.160090178667446 38.0 35.0 40.0 30.0 41.0 40 36.039259213740344 38.0 35.0 40.0 30.0 41.0 41 36.012101915720585 38.0 35.0 40.0 30.0 41.0 42 35.931144669933786 38.0 35.0 40.0 29.0 41.0 43 35.85710829121411 38.0 35.0 40.0 29.0 41.0 44 35.800792711965954 38.0 35.0 40.0 29.0 41.0 45 35.627037469466764 38.0 35.0 40.0 29.0 41.0 46 35.38559829782004 38.0 34.0 40.0 28.0 41.0 47 35.25808842732705 38.0 34.0 40.0 27.0 41.0 48 35.199656645107765 37.0 34.0 40.0 27.0 41.0 49 35.01366506383175 37.0 34.0 40.0 26.0 41.0 50 34.954280798242515 37.0 34.0 40.0 26.0 41.0 51 33.537423378857945 36.0 32.0 39.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 3.0 11 0.0 12 2.0 13 6.0 14 9.0 15 10.0 16 33.0 17 56.0 18 109.0 19 268.0 20 497.0 21 753.0 22 1030.0 23 1308.0 24 1564.0 25 1885.0 26 2067.0 27 2413.0 28 3059.0 29 3745.0 30 4957.0 31 6483.0 32 8792.0 33 11599.0 34 17630.0 35 22587.0 36 24556.0 37 35505.0 38 52250.0 39 57178.0 40 18.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 17.981196134761035 35.131657781942764 20.7145929669857 26.17255311631051 2 23.638870539074862 34.78331003333692 18.630267463475334 22.947551964112883 3 19.41529811193216 29.432120197256236 23.094649194229795 28.05793249658181 4 22.305777887023183 31.685818751632276 19.118415190573486 26.88998817077105 5 17.395111609543267 35.81337471003027 17.467315994039296 29.324197686387173 6 19.826632664034534 35.313705006682746 22.30385755764829 22.55580477163443 7 78.56605164917887 9.24254528136666 7.0222604581137755 5.169142611340697 8 79.8526723303581 5.7218134054353005 5.065060759221422 9.360453504985175 9 75.01574670087413 8.974083234756424 9.825557279584594 6.184612784784846 10 33.97216290538153 34.38503372098382 13.976157190481311 17.666646183153333 11 25.25002688461125 29.167114743520813 25.134423056242603 20.448435315625336 12 24.632833023520195 22.64874871337932 33.629576144900376 19.088842118200112 13 27.069346934386186 25.53385156622064 25.766211420582856 21.630590078810318 14 19.32312230193723 27.53253037961071 31.57597591138832 21.56837140706374 15 18.216628516123084 28.895196104035765 28.884826325411332 24.003349054429815 16 20.203785353263793 28.833361498164166 28.135897869202527 22.826955279369518 17 19.82816892753445 26.519364601416434 28.502680779807356 25.14978569124176 18 23.613906257201236 25.301875777733397 25.56457683621895 25.51964112884642 19 21.97048837816662 28.652466471049117 28.29221268031893 21.084832470465333 20 24.134699583672592 28.89327577466087 24.868649470757223 22.103375170909313 21 23.709538660070976 27.661576513603613 26.460218456669686 22.168666369655725 22 20.973069300846483 28.577573625428233 25.93251194444871 24.516845129276575 23 22.205536693653695 28.668597237798227 23.46872935645922 25.657136712088857 24 19.497872275052615 29.9145069362297 25.450125205475242 25.137495583242437 25 20.673881984237934 28.216551702948088 26.08114543806554 25.028420874748434 26 24.76418355276297 27.606655093481635 23.47564254220884 24.153518811546558 27 19.379195919684143 27.06896286851121 26.98446837601585 26.567372835788795 28 21.919791682669413 28.070222604581136 27.870124283717146 22.139861429032308 29 25.192801069239394 29.861889911357597 22.97328437773647 21.972024641666536 30 23.374249151214414 27.72494738297513 25.122517014118262 23.778286451692193 31 25.098320863994594 29.419061957506955 21.477347794693745 24.005269383804713 32 24.391639654033458 27.07433979076091 23.891201818935983 24.642818736269646 33 22.276588880524788 27.176885379380273 24.808351128385542 25.738174611709404 34 21.47619559706881 25.536540027345488 26.265112992180416 26.72215138340528 35 22.215522406403146 28.317945093942516 26.414898683422184 23.051633816232158 36 24.06326333092652 28.560290661054182 25.71436252746071 21.662083480558586 37 23.31548707234265 31.232621019157207 20.434993010001076 25.01689889849907 38 23.45874364370977 29.802743766610853 24.270658903415114 22.46785368626427 39 25.024196150123668 24.111271565298882 23.609681532576467 27.25485075200098 40 23.853563363188055 26.772848078902495 23.548615058454825 25.82497349945463 41 20.37239027237952 24.18424408154487 28.053323706082068 27.390041939993548 42 23.688415036947134 26.814711259275192 24.345167683161016 25.151706020616654 43 22.250088335151244 25.287665340359176 27.02633155638855 25.435914768101025 44 22.632233880755226 23.25595686172092 25.27307083710998 28.83873842041387 45 27.38850567649363 23.987218287680705 24.892461555005916 23.73181448081975 46 22.20745702302859 22.970979982486597 30.54053431244527 24.281028682039544 47 21.535725807690532 26.49555251716774 24.81872090700997 27.15000076813175 48 20.63509133086507 24.093220469174874 29.982102530225983 25.289585669734073 49 23.878143579186702 24.23417264529212 27.199161200129048 24.68852257539213 50 21.713164241930777 22.810824512620403 26.874625535771894 28.601385709676926 51 20.745318236984005 22.02656199591354 30.528628270320922 26.69949149678153 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1721.0 1 1331.0 2 941.0 3 621.0 4 301.0 5 283.0 6 265.0 7 287.0 8 309.0 9 355.0 10 401.0 11 423.0 12 445.0 13 459.5 14 474.0 15 489.5 16 505.0 17 623.0 18 741.0 19 730.5 20 720.0 21 741.0 22 762.0 23 941.5 24 1121.0 25 1237.0 26 1533.5 27 1714.0 28 2069.0 29 2424.0 30 2952.5 31 3481.0 32 4234.5 33 4988.0 34 4637.0 35 4286.0 36 5087.5 37 5889.0 38 6702.0 39 7515.0 40 7738.5 41 7962.0 42 10128.0 43 12294.0 44 17729.5 45 23165.0 46 23467.0 47 23769.0 48 24955.5 49 26142.0 50 25249.5 51 24357.0 52 22091.5 53 19826.0 54 17847.5 55 15869.0 56 15064.0 57 14259.0 58 13564.0 59 12869.0 60 12006.5 61 11144.0 62 9634.0 63 8124.0 64 7011.5 65 5899.0 66 5121.5 67 4344.0 68 3873.0 69 3402.0 70 2709.0 71 2016.0 72 1787.5 73 1559.0 74 1340.5 75 917.0 76 712.0 77 658.0 78 604.0 79 467.0 80 330.0 81 261.0 82 192.0 83 112.5 84 33.0 85 21.5 86 10.0 87 6.5 88 3.0 89 4.0 90 5.0 91 4.0 92 3.0 93 2.5 94 2.0 95 1.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 260372.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 29.599188852872043 #Duplication Level Percentage of deduplicated Percentage of total 1 78.0842891991488 23.112316224478825 2 9.150360720402762 5.416865100702072 3 3.124513416722894 2.7744918808474033 4 1.483105828618882 1.7559491804034228 5 0.8602792339232884 1.273178375554975 6 0.6215290392899777 1.1038053246892907 7 0.5423781595474126 1.1237767501881923 8 0.3659106243836612 0.8664526139523451 9 0.34514973789380804 0.91945370469943 >10 4.301396169616443 30.967231499546806 >50 0.9978201069185655 19.816262885410104 >100 0.1115897648829605 5.260934355460649 >500 0.00519022162246328 0.9052432673252117 >1k 0.006487777028079098 4.704038836741278 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source AATGATACGGCTGTCTCTTATACACATCTGACGCTGAAGCCATCGTATGCC 2956 1.1352987264375587 No Hit AATGATACCTGTCTCTTATACACATCTGACGCTGAAGCCATCGTATGCCGT 2928 1.12454488193815 No Hit CTGTCTCTTATACACATCTGACGCTGAAGCCATCGTATGCCGTCTTCTGCT 2585 0.9928102868203954 No Hit AATCTGTCTCTTATACACATCTGACGCTGAAGCCATCGTATGCCGTCTTCT 2288 0.8787427219516691 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1491 0.5726422195935047 No Hit AATGACTGTCTCTTATACACATCTGACGCTGAAGCCATCGTATGCCGTCTT 685 0.26308512436053033 No Hit AAACTGTCTCTTATACACATCTGACGCTGAAGCCATCGTATGCCGTCTTCT 589 0.2262148003625582 No Hit AATGATCTGTCTCTTATACACATCTGACGCTGAAGCCATCGTATGCCGTCT 559 0.21469282411319188 No Hit TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG 524 0.20125051848893122 No Hit AATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTGAAGCCATC 494 0.18972854223956492 No Hit TCCCCCGGGAATGATACCTGTCTCTTATACACATCTGACGCTGAAGCCATC 457 0.17551810486534652 No Hit AACTGTCTCTTATACACATCTGACGCTGAAGCCATCGTATGCCGTCTTCTG 450 0.17282964374049437 No Hit AATGATACGGCGACTGTCTCTTATACACATCTGACGCTGAAGCCATCGTAT 422 0.16207579924108584 No Hit AAAAACTGTCTCTTATACACATCTGACGCTGAAGCCATCGTATGCCGTCTT 403 0.15477854761648718 No Hit CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 368 0.1413362419922265 No Hit CCTGTCTCTTATACACATCTGACGCTGAAGCCATCGTATGCCGTCTTCTGC 329 0.12635767286805033 No Hit TCCCCCGGGAATGATACGGCTGTCTCTTATACACATCTGACGCTGAAGCCA 296 0.1136834989937474 No Hit CGCAACGGGAGAAACAAGCGAGATAGGAATGTCTTACACGCGGGGCAAGAC 268 0.10292965449433887 No Hit GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 262 0.10062525924446561 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 1.1145591691886994 0.0 2 0.0 0.0 0.0 1.4129783540472862 0.0 3 0.0 0.0 0.0 1.9053508057702058 0.0 4 0.0 0.0 0.0 4.465917994254374 0.0 5 0.0 0.0 0.0 4.838077827108906 0.0 6 0.0 0.0 0.0 6.413516046272257 0.0 7 0.0 0.0 0.0 7.628700474705422 0.0 8 0.0 0.0 0.0 8.427557494661484 0.0 9 0.0 0.0 0.0 10.563347825419015 0.0 10 0.0 0.0 0.0 12.088089349085156 0.0 11 0.0 0.0 0.0 14.518074140076505 0.0 12 0.0 0.0 0.0 15.38836741277864 0.0 13 0.0 0.0 0.0 15.810839875255404 0.0 14 0.0 0.0 0.0 16.35198869310064 0.0 15 0.0 0.0 0.0 16.72222819658028 0.0 16 0.0 0.0 0.0 17.41930775966694 0.0 17 0.0 0.0 0.0 18.21432412087321 0.0 18 0.0 0.0 0.0 19.86311892215753 0.0 19 0.0 0.0 0.0 20.301722151383405 0.0 20 0.0 0.0 0.0 20.931590186348764 0.0 21 0.0 0.0 0.0 21.41436099119721 0.0 22 0.0 0.0 0.0 21.94091530579325 0.0 23 0.0 0.0 0.0 22.457099841764858 0.0 24 0.0 0.0 0.0 22.773954188622433 0.0 25 0.0 0.0 0.0 23.104634906979246 0.0 26 0.0 0.0 0.0 23.37194475596454 0.0 27 0.0 0.0 0.0 23.797489745441137 0.0 28 0.0 0.0 0.0 24.145453428172 0.0 29 0.0 0.0 0.0 24.443104481280628 0.0 30 0.0 0.0 0.0 25.005760988124685 0.0 31 0.0 0.0 0.0 25.316470280982593 0.0 32 0.0 0.0 0.0 25.65905704146375 0.0 33 0.0 0.0 0.0 25.987049298695712 0.0 34 0.0 0.0 0.0 26.283164088304424 0.0 35 0.0 0.0 0.0 26.629591507535373 0.0 36 0.0 0.0 0.0 26.89805355414561 0.0 37 0.0 0.0 0.0 27.210683176378414 0.0 38 0.0 0.0 0.0 27.50564576836219 0.0 39 0.0 0.0 0.0 27.836326486719003 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CATGCGG 45 3.8198777E-10 45.000004 2 TACCTAG 65 0.0 45.000004 1 TCAAACG 45 3.8198777E-10 45.000004 1 TATCATG 25 3.882468E-5 45.0 1 CTTAACG 20 7.0232264E-4 45.0 1 TGTCATA 20 7.0232264E-4 45.0 45 CAGGTAG 20 7.0232264E-4 45.0 20 ACTATAG 25 3.882468E-5 45.0 1 ATCTCAA 20 7.0232264E-4 45.0 18 GGTACAA 25 3.882468E-5 45.0 8 CAAACGG 55 1.8189894E-12 45.0 2 CGAACCG 20 7.0232264E-4 45.0 1 GCGACTC 25 3.882468E-5 45.0 43 CTACTGA 20 7.0232264E-4 45.0 13 CGTATAG 20 7.0232264E-4 45.0 1 CTGTAAG 20 7.0232264E-4 45.0 14 CGAAATA 20 7.0232264E-4 45.0 11 CGAGTGC 20 7.0232264E-4 45.0 31 CGACGTT 20 7.0232264E-4 45.0 24 ACGCATG 20 7.0232264E-4 45.0 1 >>END_MODULE