SRR3548445_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548445_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	605875
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AATGATACCTGTCTCTTATACACATCTGACGCCGTTCCTATCGTATGCCGT	10294	1.6990303280379617	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCCGTTCCTATCGTATGCC	10053	1.659253146276047	No Hit
AATCTGTCTCTTATACACATCTGACGCCGTTCCTATCGTATGCCGTCTTCT	9258	1.528037961625748	No Hit
CTGTCTCTTATACACATCTGACGCCGTTCCTATCGTATGCCGTCTTCTGCT	6465	1.0670517846090366	TruSeq Adapter, Index 16 (95% over 23bp)
AATGACTGTCTCTTATACACATCTGACGCCGTTCCTATCGTATGCCGTCTT	2587	0.4269857643903445	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2128	0.3512275634413039	No Hit
AATGATCTGTCTCTTATACACATCTGACGCCGTTCCTATCGTATGCCGTCT	2042	0.3370332164225294	No Hit
AACTGTCTCTTATACACATCTGACGCCGTTCCTATCGTATGCCGTCTTCTG	1816	0.2997317928615639	No Hit
AATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCGTTCCTATC	1592	0.2627604703940582	No Hit
AATGATACGGCGACTGTCTCTTATACACATCTGACGCCGTTCCTATCGTAT	1530	0.25252733649680215	No Hit
AAACTGTCTCTTATACACATCTGACGCCGTTCCTATCGTATGCCGTCTTCT	1324	0.21852692387043532	No Hit
CCTGTCTCTTATACACATCTGACGCCGTTCCTATCGTATGCCGTCTTCTGC	990	0.16340004126263669	TruSeq Adapter, Index 13 (95% over 21bp)
AAAAACTGTCTCTTATACACATCTGACGCCGTTCCTATCGTATGCCGTCTT	797	0.13154528574375904	No Hit
AGCCCAGGGAATGATACCTGTCTCTTATACACATCTGACGCCGTTCCTATC	784	0.12939962863626986	No Hit
AATGCTGTCTCTTATACACATCTGACGCCGTTCCTATCGTATGCCGTCTTC	756	0.12477821332783165	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	679	0.11206932122962657	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGCGAC	35	1.2106648E-7	45.000004	45
ACAACGT	30	2.1637952E-6	45.000004	38
GTACCAT	20	7.030642E-4	45.000004	12
GCGACTC	20	7.030642E-4	45.000004	23
CTCGTGG	20	7.030642E-4	45.000004	30
CGAAACG	20	7.030642E-4	45.000004	1
CCTAGCG	40	6.8066583E-9	45.000004	1
AACCCGA	20	7.030642E-4	45.000004	24
GGCCGTA	20	7.030642E-4	45.000004	42
ATAGCGC	20	7.030642E-4	45.000004	1
ACCGAGT	20	7.030642E-4	45.000004	20
TTCGTTC	20	7.030642E-4	45.000004	42
GCGTTCG	20	7.030642E-4	45.000004	39
CGTTCGC	20	7.030642E-4	45.000004	40
TCGGCAA	20	7.030642E-4	45.000004	42
AATATCG	20	7.030642E-4	45.000004	24
ACCTAGA	30	2.1637952E-6	45.000004	23
TCGGACG	20	7.030642E-4	45.000004	26
TATCTCG	20	7.030642E-4	45.000004	1
CGTACTC	20	7.030642E-4	45.000004	45