SRR3548439_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548439_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	526519
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AATGATACCTGTCTCTTATACACATCTGACGCGTCAAAGGTCGTATGCCGT	5897	1.1199975689386328	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCGTCAAAGGTCGTATGCC	5766	1.0951171752586326	No Hit
AATCTGTCTCTTATACACATCTGACGCGTCAAAGGTCGTATGCCGTCTTCT	4882	0.9272219995859597	No Hit
CTGTCTCTTATACACATCTGACGCGTCAAAGGTCGTATGCCGTCTTCTGCT	2879	0.5467988809520644	Illumina Single End Adapter 1 (95% over 22bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1289	0.24481547674442897	No Hit
AATGACTGTCTCTTATACACATCTGACGCGTCAAAGGTCGTATGCCGTCTT	1219	0.2315206098925205	No Hit
AATGATCTGTCTCTTATACACATCTGACGCGTCAAAGGTCGTATGCCGTCT	1012	0.192205789344734	No Hit
AATGATACGGCGACTGTCTCTTATACACATCTGACGCGTCAAAGGTCGTAT	896	0.17017429570442852	No Hit
AATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGTCAAAGGTC	847	0.1608678889080926	No Hit
AACTGTCTCTTATACACATCTGACGCGTCAAAGGTCGTATGCCGTCTTCTG	800	0.1519413354503826	No Hit
AATGCTGTCTCTTATACACATCTGACGCGTCAAAGGTCGTATGCCGTCTTC	664	0.12611130842381757	No Hit
AAACTGTCTCTTATACACATCTGACGCGTCAAAGGTCGTATGCCGTCTTCT	567	0.10768842150045868	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGGTTA	30	2.1632513E-6	45.000004	6
CAACGCT	20	7.0297986E-4	45.000004	24
CAACGAA	20	7.0297986E-4	45.000004	19
GCGGTCA	25	3.8879152E-5	45.000004	32
GACCGTA	20	7.0297986E-4	45.000004	27
GAATCGC	30	2.1632513E-6	45.000004	22
ATTGTCG	25	3.8879152E-5	45.000004	10
ATTCGAA	30	2.1632513E-6	45.000004	10
CACGATA	25	3.8879152E-5	45.000004	22
ATCGTAG	20	7.0297986E-4	45.000004	1
AATGCGG	80	0.0	45.000004	2
TCTACCG	25	3.8879152E-5	45.000004	1
TACGATC	20	7.0297986E-4	45.000004	36
CGTAGCG	25	3.8879152E-5	45.000004	1
ACTACTA	25	3.8879152E-5	45.000004	41
AAACCCG	30	2.1632513E-6	45.000004	1
AGCGATC	20	7.0297986E-4	45.000004	42
CGAATCT	20	7.0297986E-4	45.000004	22
CGTACTC	20	7.0297986E-4	45.000004	45
GGACGAC	20	7.0297986E-4	45.000004	8