SRR3548438_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548438_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	228586
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATGCCGTCTTCTGCT	2471	1.0809935866588505	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATGCC	2026	0.8863184971958038	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2021	0.8841311366400392	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATGCCGT	1802	0.788324744297551	No Hit
AATCTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATGCCGTCTTCT	1483	0.6487711408397714	No Hit
AAACTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATGCCGTCTTCT	895	0.39153753948185804	No Hit
AAAAACTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATGCCGTCTT	550	0.24060966113410273	No Hit
AATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGGTTGTCTTC	482	0.21086155757570457	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	461	0.20167464324149337	No Hit
CCTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATGCCGTCTTCTGC	414	0.18111345401730639	No Hit
AATGACTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATGCCGTCTT	414	0.18111345401730639	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	374	0.16361456957118983	No Hit
AAAAAACTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATGCCGTCT	339	0.14830304568083785	No Hit
AACTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATGCCGTCTTCTG	337	0.14742810145853202	No Hit
AATGATCTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATGCCGTCT	314	0.137366242902015	No Hit
GAAAAACTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATGCCGTCT	262	0.11461769312206348	No Hit
AATGATACGGCGACTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTAT	251	0.1098054998993814	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACTATGG	35	1.2062264E-7	45.000004	2
ATTCCGG	35	1.2062264E-7	45.000004	2
CGTACCA	35	1.2062264E-7	45.000004	45
GCGTAGG	70	0.0	45.000004	2
GCATAAG	20	7.021418E-4	45.0	1
TCTGCAA	25	3.8809696E-5	45.0	39
CGTGGTG	20	7.021418E-4	45.0	39
AGGTAAT	25	3.8809696E-5	45.0	6
GCCTTAC	20	7.021418E-4	45.0	17
TCGCAGG	25	3.8809696E-5	45.0	2
TCGCAAT	20	7.021418E-4	45.0	40
TACCCCG	20	7.021418E-4	45.0	25
CAAGTTA	20	7.021418E-4	45.0	32
CTCCGTA	20	7.021418E-4	45.0	17
CTACTCG	20	7.021418E-4	45.0	41
CTCGTAC	20	7.021418E-4	45.0	29
GGTCGTA	20	7.021418E-4	45.0	13
TACTTGC	25	3.8809696E-5	45.0	42
GGGCTAT	20	7.021418E-4	45.0	7
GTCTGCG	20	7.021418E-4	45.0	26