##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3548438_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 228586 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.64416018478822 31.0 31.0 34.0 30.0 34.0 2 31.84436054701513 33.0 31.0 34.0 30.0 34.0 3 32.00980375001094 33.0 31.0 34.0 30.0 34.0 4 35.69531379874533 37.0 35.0 37.0 33.0 37.0 5 35.4484307875373 37.0 35.0 37.0 33.0 37.0 6 34.89263121975974 37.0 35.0 37.0 32.0 37.0 7 35.16145345734209 37.0 35.0 37.0 32.0 37.0 8 35.52644081439808 37.0 35.0 37.0 33.0 37.0 9 37.18970978100146 39.0 37.0 39.0 34.0 39.0 10 36.85705161295967 39.0 37.0 39.0 32.0 39.0 11 36.8574015906486 39.0 37.0 39.0 32.0 39.0 12 36.71687242438295 39.0 35.0 39.0 32.0 39.0 13 36.71849544591532 39.0 35.0 39.0 32.0 39.0 14 37.81696604341473 40.0 37.0 41.0 33.0 41.0 15 37.864641754088176 40.0 37.0 41.0 33.0 41.0 16 37.728023588496235 40.0 36.0 41.0 33.0 41.0 17 37.717498009501895 39.0 36.0 41.0 33.0 41.0 18 37.62665255089988 39.0 36.0 41.0 33.0 41.0 19 37.54552334788657 39.0 36.0 41.0 32.0 41.0 20 37.4897937756468 39.0 36.0 41.0 32.0 41.0 21 37.46507660136666 39.0 36.0 41.0 32.0 41.0 22 37.45297612277217 39.0 36.0 41.0 32.0 41.0 23 37.293491289930266 39.0 35.0 41.0 32.0 41.0 24 37.17291085193319 39.0 35.0 41.0 32.0 41.0 25 37.22738487921395 39.0 35.0 41.0 32.0 41.0 26 37.151050370538876 39.0 35.0 41.0 32.0 41.0 27 36.98277672298391 39.0 35.0 40.0 31.0 41.0 28 36.94557846937258 39.0 35.0 40.0 31.0 41.0 29 36.67039101257295 39.0 35.0 40.0 30.0 41.0 30 36.61426334071203 39.0 35.0 40.0 30.0 41.0 31 36.57785253690077 39.0 35.0 40.0 30.0 41.0 32 36.499759390338866 39.0 35.0 40.0 30.0 41.0 33 36.23665491324928 39.0 35.0 40.0 30.0 41.0 34 36.2516514572196 39.0 35.0 40.0 30.0 41.0 35 36.13182784597482 38.0 35.0 40.0 30.0 41.0 36 36.07678947967067 38.0 35.0 40.0 30.0 41.0 37 35.91102692203372 38.0 35.0 40.0 29.0 41.0 38 35.76109210537828 38.0 35.0 40.0 29.0 41.0 39 35.80657608077485 38.0 35.0 40.0 29.0 41.0 40 35.63457954555397 38.0 35.0 40.0 28.0 41.0 41 35.655840690156005 38.0 35.0 40.0 28.0 41.0 42 35.53253480090644 38.0 35.0 40.0 28.0 41.0 43 35.429553865941045 38.0 34.0 40.0 27.0 41.0 44 35.22878478996964 38.0 34.0 40.0 26.0 41.0 45 35.01256419903231 38.0 34.0 40.0 26.0 41.0 46 34.77680172888979 37.0 34.0 40.0 25.0 41.0 47 34.64042417295897 37.0 33.0 40.0 25.0 41.0 48 34.573687802402596 37.0 33.0 40.0 25.0 41.0 49 34.46692273367573 37.0 33.0 40.0 24.0 41.0 50 34.34164821992598 37.0 33.0 40.0 24.0 41.0 51 33.0331253882565 35.0 31.0 39.0 20.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 0.0 10 1.0 11 2.0 12 2.0 13 3.0 14 6.0 15 12.0 16 41.0 17 72.0 18 148.0 19 300.0 20 495.0 21 734.0 22 1115.0 23 1361.0 24 1639.0 25 1770.0 26 2129.0 27 2520.0 28 3110.0 29 3845.0 30 4886.0 31 6211.0 32 8034.0 33 10495.0 34 15681.0 35 20300.0 36 22450.0 37 31401.0 38 44845.0 39 44969.0 40 8.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 20.24795919260147 35.519235648727395 18.490633722100217 25.74217143657092 2 22.443631718477945 34.92558599389289 19.263646942507414 23.36713534512175 3 20.072095403918 31.953837942831143 23.00403349286483 24.970033160386027 4 21.86748094808956 32.72991346801641 19.25096025128398 26.151645332610045 5 17.99847759705319 35.21125528247574 18.521694241992073 28.268572878479 6 18.424575433316125 37.541231746476164 21.101029809349654 22.933163010858056 7 76.03221544626531 11.058420025723361 7.306659200475969 5.60270532753537 8 77.85778656610641 7.121608497458287 6.0493643530224945 8.971240583412808 9 72.21002161112229 10.589012450456284 10.939427611489768 6.261538326931658 10 34.5668588627475 33.02126989404425 13.900676331883844 18.511194911324402 11 25.1318978415126 30.149265484325372 25.063652192172746 19.655184481989274 12 26.087336932270567 24.41969324455566 31.29894219243523 18.19402763073854 13 25.541809209662887 26.598741830208322 25.800355227354256 22.059093732774535 14 18.466135283875655 29.173702676454376 30.637046888260873 21.723115151409097 15 16.686061263594446 30.27307009178165 29.13651754700638 23.90435109761753 16 19.141154751384597 29.328567803802507 28.294821205148175 23.23545623966472 17 17.148469285083078 28.91603160298531 28.67629688607351 25.2592022258581 18 21.979473808544707 28.60980112517827 24.65680312880054 24.753921937476488 19 20.404574208394216 31.754350660145413 27.31007148294296 20.531003648517405 20 23.085403305539273 29.741104004619707 24.98315732372061 22.190335366120408 21 22.108528081334818 30.141828458435775 25.72161024734673 22.02803321288268 22 21.553375972281767 28.66973480440622 25.313448767641063 24.463440455670952 23 21.270768988476984 28.90859457709571 24.24426692798334 25.576369506443964 24 18.769740929015775 31.198761078981214 25.005905873500566 25.025592118502445 25 21.535002143613344 28.973777921657494 24.219331017647626 25.271888917081537 26 23.94109875495437 29.75729047273236 23.522437944581032 22.779172827732232 27 20.560751752075806 27.048463160473517 27.407627763730062 24.98315732372061 28 23.755610579825536 27.28819787738532 26.37256874874227 22.583622794046878 29 25.067589441173126 29.241073381571926 23.97478410751315 21.716553069741803 30 23.866728496058375 25.589493669778552 26.80041647344982 23.743361360713255 31 25.72117277523558 28.10364589257435 23.287077948780766 22.88810338340931 32 26.175706298723455 24.77667048725644 24.99190676594367 24.055716448076435 33 22.74898725206268 25.09427523995345 29.65448452661143 22.502252981372436 34 23.74423630493556 24.158959866308525 26.871724427567745 25.22507940118817 35 25.702361474456005 22.832544425292888 30.350502655455713 21.114591444795394 36 24.889100819822737 24.473939786338622 30.0477719545379 20.589187439300744 37 23.50668894857953 25.523435380994464 27.406315347396603 23.563560323029407 38 23.623931474368508 25.980593737149256 29.954152922751177 20.44132186573106 39 25.245203118301205 21.81060957363968 28.24801168925481 24.6961756188043 40 25.05359033361623 23.735924334823654 27.502121739739096 23.708363591821023 41 21.09096795079314 21.62599634273315 31.021147401853135 26.26188830462058 42 26.093024069715554 23.75473563560323 26.686673724550058 23.465566570131156 43 22.77348569028724 22.426570306142985 28.50612023483503 26.293823768734743 44 23.93628656173169 20.716491823646244 28.282571986035894 27.064649628586178 45 26.71817171655307 22.17983603545274 28.454935997830137 22.647056250164052 46 22.00440971888042 22.600684206381843 31.423184272002658 23.971721802735075 47 23.163710813435642 24.21714365709186 28.150892880578866 24.468252648893632 48 22.696928070835483 22.319827111021674 31.513740999011315 23.46950381913153 49 23.406070363014358 21.0253471341202 30.151015372769983 25.41756713009546 50 20.807048550654898 21.93091440420673 28.074772733238255 29.18726431190012 51 21.853919312643818 20.673619556753255 31.327815351771328 26.1446457788316 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 2341.0 1 1824.0 2 1307.0 3 898.0 4 489.0 5 436.5 6 384.0 7 416.0 8 448.0 9 471.0 10 494.0 11 535.5 12 577.0 13 579.0 14 581.0 15 593.5 16 606.0 17 705.5 18 805.0 19 784.5 20 764.0 21 792.0 22 820.0 23 1149.0 24 1478.0 25 1293.5 26 1389.5 27 1670.0 28 2162.0 29 2654.0 30 2575.0 31 2496.0 32 3116.0 33 3736.0 34 3920.0 35 4104.0 36 4592.5 37 5081.0 38 5739.5 39 6398.0 40 6934.5 41 7471.0 42 8905.0 43 10339.0 44 13980.0 45 17621.0 46 19234.5 47 20848.0 48 22561.5 49 24275.0 50 22862.5 51 21450.0 52 19581.5 53 17713.0 54 15828.0 55 13943.0 56 12791.5 57 11640.0 58 11405.0 59 11170.0 60 9939.5 61 8709.0 62 7992.0 63 7275.0 64 6509.5 65 5744.0 66 4882.0 67 4020.0 68 3426.0 69 2832.0 70 2283.0 71 1734.0 72 1458.5 73 1183.0 74 1089.0 75 822.0 76 649.0 77 398.0 78 147.0 79 177.0 80 207.0 81 170.0 82 133.0 83 130.0 84 127.0 85 69.0 86 11.0 87 8.0 88 5.0 89 3.0 90 1.0 91 1.5 92 2.0 93 1.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 228586.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 33.8690908454586 #Duplication Level Percentage of deduplicated Percentage of total 1 78.94859209506588 26.73917037788841 2 9.179798501679153 6.21822858792752 3 3.1658486179281837 3.2167324333073766 4 1.5448204598295014 2.092866579755541 5 0.8524928958925343 1.443657966804616 6 0.5631619736502196 1.144427042776023 7 0.43528803926633947 1.031996710209724 8 0.37199690002583313 1.0079357440963137 9 0.2777060191165074 0.8465085350808886 >10 3.8349263756135366 30.591549788700974 >50 0.7452854559545338 16.533383496802077 >100 0.07104107465771119 4.212856430402562 >500 0.0025833118057349523 0.6321472006159607 >1k 0.006458279514337381 4.288539105632016 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATGCCGTCTTCTGCT 2471 1.0809935866588505 No Hit AATGATACGGCTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATGCC 2026 0.8863184971958038 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 2021 0.8841311366400392 No Hit AATGATACCTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATGCCGT 1802 0.788324744297551 No Hit AATCTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATGCCGTCTTCT 1483 0.6487711408397714 No Hit AAACTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATGCCGTCTTCT 895 0.39153753948185804 No Hit AAAAACTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATGCCGTCTT 550 0.24060966113410273 No Hit AATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGGTTGTCTTC 482 0.21086155757570457 No Hit CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 461 0.20167464324149337 No Hit CCTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATGCCGTCTTCTGC 414 0.18111345401730639 No Hit AATGACTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATGCCGTCTT 414 0.18111345401730639 No Hit GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 374 0.16361456957118983 No Hit AAAAAACTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATGCCGTCT 339 0.14830304568083785 No Hit AACTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATGCCGTCTTCTG 337 0.14742810145853202 No Hit AATGATCTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATGCCGTCT 314 0.137366242902015 No Hit GAAAAACTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTATGCCGTCT 262 0.11461769312206348 No Hit AATGATACGGCGACTGTCTCTTATACACATCTGACGCGGTTGTCTTCGTAT 251 0.1098054998993814 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 4.37472111152914E-4 0.0 0.0 1.2218596064500888 0.0 2 4.37472111152914E-4 0.0 0.0 1.6243339487107697 0.0 3 4.37472111152914E-4 0.0 0.0 2.1759862808745942 0.0 4 4.37472111152914E-4 0.0 0.0 4.736073075341447 0.0 5 4.37472111152914E-4 0.0 0.0 5.097425039153754 0.0 6 4.37472111152914E-4 0.0 0.0 6.857375342321927 0.0 7 4.37472111152914E-4 0.0 0.0 8.212226470562502 0.0 8 4.37472111152914E-4 0.0 0.0 9.197851136990018 0.0 9 4.37472111152914E-4 0.0 0.0 11.178287384179258 0.0 10 4.37472111152914E-4 0.0 0.0 13.237468611376025 0.0 11 4.37472111152914E-4 0.0 0.0 15.839115256402405 0.0 12 4.37472111152914E-4 0.0 0.0 16.834364309275283 0.0 13 4.37472111152914E-4 0.0 0.0 17.262212033982834 0.0 14 4.37472111152914E-4 0.0 0.0 17.790678344255554 0.0 15 4.37472111152914E-4 0.0 0.0 18.205401905628516 0.0 16 4.37472111152914E-4 0.0 0.0 18.96266613003421 0.0 17 4.37472111152914E-4 0.0 0.0 19.8992939200126 0.0 18 4.37472111152914E-4 0.0 0.0 21.475068464385394 0.0 19 4.37472111152914E-4 0.0 0.0 22.058656260663383 0.0 20 4.37472111152914E-4 0.0 0.0 22.657555580831723 0.0 21 4.37472111152914E-4 0.0 0.0 23.19870858232788 0.0 22 4.37472111152914E-4 0.0 0.0 23.7875460439397 0.0 23 4.37472111152914E-4 0.0 0.0 24.313824993656656 0.0 24 4.37472111152914E-4 0.0 0.0 24.67517695746896 0.0 25 4.37472111152914E-4 0.0 0.0 24.977470186275625 0.0 26 4.37472111152914E-4 0.0 0.0 25.289825273638805 0.0 27 4.37472111152914E-4 0.0 0.0 25.699736641789087 0.0 28 4.37472111152914E-4 0.0 0.0 26.06677574304638 0.0 29 4.37472111152914E-4 0.0 0.0 26.417190904079863 0.0 30 4.37472111152914E-4 0.0 0.0 26.993779146579406 0.0 31 4.37472111152914E-4 0.0 0.0 27.331070144278304 0.0 32 4.37472111152914E-4 0.0 0.0 27.655674450753764 0.0 33 4.37472111152914E-4 0.0 0.0 27.988153255229978 0.0 34 4.37472111152914E-4 0.0 0.0 28.279072209146666 0.0 35 4.37472111152914E-4 0.0 0.0 28.592302240732153 0.0 36 4.37472111152914E-4 0.0 0.0 28.8919706368719 0.0 37 4.37472111152914E-4 0.0 0.0 29.191201560900492 0.0 38 4.37472111152914E-4 0.0 0.0 29.550366164157037 0.0 39 4.37472111152914E-4 0.0 0.0 29.870158277409814 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACTATGG 35 1.2062264E-7 45.000004 2 ATTCCGG 35 1.2062264E-7 45.000004 2 CGTACCA 35 1.2062264E-7 45.000004 45 GCGTAGG 70 0.0 45.000004 2 GCATAAG 20 7.021418E-4 45.0 1 TCTGCAA 25 3.8809696E-5 45.0 39 CGTGGTG 20 7.021418E-4 45.0 39 AGGTAAT 25 3.8809696E-5 45.0 6 GCCTTAC 20 7.021418E-4 45.0 17 TCGCAGG 25 3.8809696E-5 45.0 2 TCGCAAT 20 7.021418E-4 45.0 40 TACCCCG 20 7.021418E-4 45.0 25 CAAGTTA 20 7.021418E-4 45.0 32 CTCCGTA 20 7.021418E-4 45.0 17 CTACTCG 20 7.021418E-4 45.0 41 CTCGTAC 20 7.021418E-4 45.0 29 GGTCGTA 20 7.021418E-4 45.0 13 TACTTGC 25 3.8809696E-5 45.0 42 GGGCTAT 20 7.021418E-4 45.0 7 GTCTGCG 20 7.021418E-4 45.0 26 >>END_MODULE