SRR3548435_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548435_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	391891
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AATGATACCTGTCTCTTATACACATCTGACGCACATGGTGTCGTATGCCGT	3790	0.9671056492749259	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCACATGGTGTCGTATGCC	3748	0.9563883835045969	No Hit
AATCTGTCTCTTATACACATCTGACGCACATGGTGTCGTATGCCGTCTTCT	3405	0.8688640463802435	No Hit
CTGTCTCTTATACACATCTGACGCACATGGTGTCGTATGCCGTCTTCTGCT	2869	0.732091321311283	TruSeq Adapter, Index 21 (95% over 23bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1710	0.43634582064910904	No Hit
AATGACTGTCTCTTATACACATCTGACGCACATGGTGTCGTATGCCGTCTT	912	0.23271777101285815	No Hit
AATGATCTGTCTCTTATACACATCTGACGCACATGGTGTCGTATGCCGTCT	823	0.21000737449954196	No Hit
AAACTGTCTCTTATACACATCTGACGCACATGGTGTCGTATGCCGTCTTCT	737	0.1880624969698207	No Hit
AACTGTCTCTTATACACATCTGACGCACATGGTGTCGTATGCCGTCTTCTG	664	0.16943486836901075	No Hit
AAAAACTGTCTCTTATACACATCTGACGCACATGGTGTCGTATGCCGTCTT	597	0.15233827773539071	No Hit
AATGATACGGCGACTGTCTCTTATACACATCTGACGCACATGGTGTCGTAT	595	0.15182793174632742	No Hit
AATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCACATGGTGTC	520	0.1326899571564542	No Hit
CCTGTCTCTTATACACATCTGACGCACATGGTGTCGTATGCCGTCTTCTGC	502	0.12809684325488466	TruSeq Adapter, Index 14 (95% over 21bp)
AATGCTGTCTCTTATACACATCTGACGCACATGGTGTCGTATGCCGTCTTC	431	0.10997956064313802	No Hit
TGCGAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	418	0.10666231171422666	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	417	0.10640713871969502	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	416	0.10615196572516336	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATCCTCT	20	7.027589E-4	45.000004	37
TGATAAC	20	7.027589E-4	45.000004	27
GATCGGA	20	7.027589E-4	45.000004	25
CGAGTAA	20	7.027589E-4	45.000004	36
CACGGCT	20	7.027589E-4	45.000004	33
TAGACAT	40	6.7957444E-9	45.000004	17
ATTACGG	20	7.027589E-4	45.000004	2
TAGCGAT	20	7.027589E-4	45.000004	45
TAGCGAA	20	7.027589E-4	45.000004	25
CACGCTC	20	7.027589E-4	45.000004	20
CGATTGC	20	7.027589E-4	45.000004	45
TAACGGT	20	7.027589E-4	45.000004	40
CCGCTAC	20	7.027589E-4	45.000004	28
TCTAGCG	20	7.027589E-4	45.000004	1
GCCGCTA	20	7.027589E-4	45.000004	27
TTTCACG	20	7.027589E-4	45.000004	1
TAGCACG	20	7.027589E-4	45.000004	1
CCGTAGT	20	7.027589E-4	45.000004	27
CTAGTAG	20	7.027589E-4	45.000004	1
CAGATAC	20	7.027589E-4	45.000004	14