SRR3548428_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548428_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	369258
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCTACTAGGGTCGTATGCCGTCTTCTGCT	2175	0.5890190598443366	Illumina Single End Adapter 2 (95% over 21bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1166	0.3157683787487339	No Hit
AAACTGTCTCTTATACACATCTGACGCTACTAGGGTCGTATGCCGTCTTCT	748	0.20256839391428216	No Hit
AAAAACTGTCTCTTATACACATCTGACGCTACTAGGGTCGTATGCCGTCTT	526	0.14244782780603263	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	507	0.1373023739499212	No Hit
CCTGTCTCTTATACACATCTGACGCTACTAGGGTCGTATGCCGTCTTCTGC	507	0.1373023739499212	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCTACTAGGGTCGTATGCCGT	460	0.12457414599006655	No Hit
AATCTGTCTCTTATACACATCTGACGCTACTAGGGTCGTATGCCGTCTTCT	457	0.12376170590752265	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCTACTAGGGTCGTATGCC	454	0.12294926582497874	No Hit
TGCGAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	420	0.11374161155614773	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATCCCGC	35	1.2089367E-7	45.000004	44
TAGGGTA	65	0.0	45.000004	5
AGTAGGA	35	1.2089367E-7	45.000004	28
CGTGGTT	20	7.027061E-4	45.0	32
CGAACCG	20	7.027061E-4	45.0	44
CTCGTGG	25	3.885646E-5	45.0	2
GTACATC	20	7.027061E-4	45.0	36
CTCAACG	20	7.027061E-4	45.0	1
GTCGAAC	20	7.027061E-4	45.0	11
GTCTGCG	20	7.027061E-4	45.0	44
CGAGTAG	20	7.027061E-4	45.0	27
CGAAACG	20	7.027061E-4	45.0	1
CCGATAT	20	7.027061E-4	45.0	28
GTTTAGG	25	3.885646E-5	45.0	2
GTTTACC	25	3.885646E-5	45.0	41
ATAATCG	20	7.027061E-4	45.0	28
GGCCGAT	45	3.8380676E-10	45.0	8
ATAGCCC	20	7.027061E-4	45.0	25
TAAACGT	20	7.027061E-4	45.0	21
TAAACGG	95	0.0	45.0	2