SRR3548426_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548426_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	259564
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCTTGCTTCGTCGTATGCCGTCTTCTGCT	1985	0.7647439552480313	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1696	0.6534033995469326	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCTTGCTTCGTCGTATGCCGT	1240	0.477724183631012	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCTTGCTTCGTCGTATGCC	1211	0.4665516019170609	No Hit
AATCTGTCTCTTATACACATCTGACGCTTGCTTCGTCGTATGCCGTCTTCT	1144	0.4407390855434498	No Hit
AAACTGTCTCTTATACACATCTGACGCTTGCTTCGTCGTATGCCGTCTTCT	665	0.25619885654405083	No Hit
AAAAACTGTCTCTTATACACATCTGACGCTTGCTTCGTCGTATGCCGTCTT	498	0.19186019632922902	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	489	0.18839284338352005	No Hit
CCTGTCTCTTATACACATCTGACGCTTGCTTCGTCGTATGCCGTCTTCTGC	458	0.17644973879274475	No Hit
GCTCTAGGGATTTGGAGAAAGAAGATTAGAAAATGGAAGTGAAAGACGAAG	354	0.1363825491978857	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	320	0.12328366029187407	No Hit
AATGACTGTCTCTTATACACATCTGACGCTTGCTTCGTCGTATGCCGTCTT	308	0.11866052303092878	No Hit
AAAAAACTGTCTCTTATACACATCTGACGCTTGCTTCGTCGTATGCCGTCT	278	0.1071026798785656	No Hit
AATGATCTGTCTCTTATACACATCTGACGCTTGCTTCGTCGTATGCCGTCT	272	0.10479111124809297	No Hit
AACTGTCTCTTATACACATCTGACGCTTGCTTCGTCGTATGCCGTCTTCTG	268	0.10325006549444453	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGCCCA	20	7.023184E-4	45.000004	17
CGGGTCC	20	7.023184E-4	45.000004	6
CTAGAAT	20	7.023184E-4	45.000004	28
GCCCATT	20	7.023184E-4	45.000004	40
AGTCCGT	20	7.023184E-4	45.000004	37
ATCTACA	20	7.023184E-4	45.000004	10
GTCGAAC	20	7.023184E-4	45.000004	36
ATAGGCG	20	7.023184E-4	45.000004	1
CACGGAG	20	7.023184E-4	45.000004	22
GCGAATG	20	7.023184E-4	45.000004	1
GAGTCCG	20	7.023184E-4	45.000004	36
GGGTCGT	20	7.023184E-4	45.000004	8
GATCCGT	20	7.023184E-4	45.000004	30
ACTTCGC	20	7.023184E-4	45.000004	14
GTTAGGT	20	7.023184E-4	45.000004	18
TTCAACG	20	7.023184E-4	45.000004	1
TGAGTCC	20	7.023184E-4	45.000004	14
ACCTCGT	20	7.023184E-4	45.000004	10
ATCCGTT	20	7.023184E-4	45.000004	31
CGTTAGC	20	7.023184E-4	45.000004	32