##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3548426_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 259564 Sequences flagged as poor quality 0 Sequence length 51 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.692607603519747 31.0 31.0 34.0 30.0 34.0 2 31.891964987440478 33.0 31.0 34.0 30.0 34.0 3 32.06299024518038 34.0 31.0 34.0 30.0 34.0 4 35.736824058806306 37.0 35.0 37.0 33.0 37.0 5 35.512740595768285 37.0 35.0 37.0 33.0 37.0 6 34.880765437425836 37.0 35.0 37.0 32.0 37.0 7 35.30737698602272 37.0 35.0 37.0 33.0 37.0 8 35.727462205852895 37.0 35.0 37.0 35.0 37.0 9 37.362573392304014 39.0 37.0 39.0 34.0 39.0 10 36.89818695967083 39.0 37.0 39.0 33.0 39.0 11 36.950809819543544 39.0 37.0 39.0 33.0 39.0 12 36.96220585289177 39.0 37.0 39.0 33.0 39.0 13 36.955459925105174 39.0 37.0 39.0 33.0 39.0 14 38.10217133346689 40.0 37.0 41.0 33.0 41.0 15 38.15187776425082 40.0 37.0 41.0 33.0 41.0 16 37.98622305096238 40.0 37.0 41.0 33.0 41.0 17 37.99099644018431 40.0 37.0 41.0 33.0 41.0 18 37.90119585150483 40.0 37.0 41.0 33.0 41.0 19 37.881485876315665 40.0 37.0 41.0 33.0 41.0 20 37.847760089997074 40.0 37.0 41.0 33.0 41.0 21 37.813182875899585 40.0 37.0 41.0 33.0 41.0 22 37.79559954385046 39.0 37.0 41.0 33.0 41.0 23 37.67506665022884 39.0 37.0 41.0 33.0 41.0 24 37.602441016473776 39.0 36.0 41.0 32.0 41.0 25 37.56719730008784 39.0 36.0 41.0 32.0 41.0 26 37.54509099875175 39.0 36.0 41.0 33.0 41.0 27 37.468724476429706 39.0 36.0 41.0 32.0 41.0 28 37.41137831132206 39.0 36.0 41.0 32.0 41.0 29 37.20643848915874 39.0 36.0 41.0 31.0 41.0 30 37.26191613629009 39.0 36.0 41.0 32.0 41.0 31 37.231330230694546 39.0 36.0 41.0 32.0 41.0 32 37.199018353854925 39.0 36.0 41.0 32.0 41.0 33 36.984477816646375 39.0 36.0 41.0 31.0 41.0 34 37.0071080735387 39.0 36.0 41.0 31.0 41.0 35 36.940072583254995 39.0 36.0 41.0 31.0 41.0 36 36.928010047618315 39.0 36.0 41.0 31.0 41.0 37 36.863255305050004 39.0 35.0 41.0 31.0 41.0 38 36.69450308979673 39.0 35.0 41.0 30.0 41.0 39 36.64903838744972 39.0 35.0 41.0 30.0 41.0 40 36.54128461574024 39.0 35.0 40.0 30.0 41.0 41 36.543885130449524 39.0 35.0 40.0 30.0 41.0 42 36.44204897443405 39.0 35.0 40.0 30.0 41.0 43 36.39055493057589 39.0 35.0 40.0 30.0 41.0 44 36.29922485398591 39.0 35.0 40.0 30.0 41.0 45 36.072298161532416 39.0 35.0 40.0 29.0 41.0 46 35.9196190534897 38.0 35.0 40.0 29.0 41.0 47 35.788622459200816 38.0 35.0 40.0 28.0 41.0 48 35.69110893652432 38.0 35.0 40.0 28.0 41.0 49 35.58845602625942 38.0 34.0 40.0 28.0 41.0 50 35.47632183199519 38.0 34.0 40.0 27.0 41.0 51 34.224044936894174 37.0 33.0 40.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 1.0 11 0.0 12 2.0 13 2.0 14 3.0 15 12.0 16 19.0 17 47.0 18 113.0 19 246.0 20 430.0 21 710.0 22 901.0 23 1202.0 24 1397.0 25 1605.0 26 1842.0 27 2151.0 28 2659.0 29 3383.0 30 4353.0 31 5867.0 32 7544.0 33 10147.0 34 14470.0 35 19760.0 36 24004.0 37 35447.0 38 55979.0 39 65254.0 40 13.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 19.86215345733615 34.71706399963015 20.863833197207626 24.556949345826077 2 21.765344963091955 32.311491578184956 20.756730517329057 25.166432941394028 3 19.47997411043134 32.9302214482748 22.401411597910343 25.18839284338352 4 19.577059992911188 32.96296867053983 19.911081660014485 27.548889676534493 5 17.749764990522568 35.8420273997935 18.7244764297052 27.683731179978732 6 19.486138293445933 37.61268897073554 20.51208950393737 22.389083231881155 7 82.18397004207056 7.420520565255583 5.980798569909541 4.414710822764327 8 84.01742922747376 5.467630333944615 4.398529842351019 6.116410596230602 9 76.81920451218197 10.566565471328843 8.27233360558475 4.34189641090444 10 27.782743369650646 47.039651107241376 11.809418871646299 13.368186651461683 11 19.524664437287143 28.898460495292106 33.560509161517004 18.016365905903747 12 21.862045584133394 25.177220261669568 33.999321939868395 18.961412214328643 13 23.945924704504478 27.269960395124134 28.32326516774283 20.46084973262856 14 17.654220153796366 31.065556086360203 30.934181935861677 20.346041823981754 15 18.14157587338768 31.71587739439984 29.423571835847806 20.71897489636467 16 20.562944013807773 32.486785532662466 26.822286603689268 20.127983849840504 17 19.31354116903731 29.868163535775377 27.72842150683454 23.089873788352776 18 22.117859179239034 28.477369743107673 26.960980721517625 22.443790356135672 19 20.7420905826694 32.14274706816045 28.425359448922038 18.68980290024811 20 21.035659798739424 30.38980752338537 27.181350264289346 21.39318241358586 21 22.00613336209952 29.947142130649855 27.860180918771476 20.186543588479143 22 19.756206561772817 28.509346442495875 29.041007227504583 22.69343976822672 23 20.280547379451697 29.54724075757809 27.362808401781447 22.80940346118876 24 19.348599959932812 30.01263657517992 27.28305928403014 23.355704180857128 25 20.0802114314774 31.063244517729732 26.773358401010928 22.083185649781942 26 21.972230355519258 30.414464255443747 26.712101832303404 20.9012035567336 27 20.171518392381067 29.353839515495217 26.53950470789478 23.935137384228938 28 20.684301366907583 28.286280069655266 29.826170038988458 21.20324852444869 29 21.939097871815814 28.62685118121157 28.78789046246783 20.646160484504787 30 22.54704042163012 27.27496879382349 28.36333235733769 21.814658427208705 31 21.165107642045893 29.22670324081922 25.479265229384662 24.12892388775023 32 23.015133069300827 25.43688647115933 28.200366768889367 23.347613690650476 33 20.527885222912268 26.57803085173599 30.01687445100245 22.877209474349293 34 18.922886070487433 25.782465981414987 30.431801020172287 24.86284692792529 35 21.78807538795827 26.209720916614014 30.869072752770027 21.133130942657687 36 21.925998982909803 25.4072213404016 31.03396464841041 21.63281502827819 37 22.62062535636683 27.603982062227427 26.223590328396853 23.55180225300889 38 22.330908754680927 26.263657517991707 29.506017783668 21.899415943659367 39 22.237675486585196 24.709898136875683 30.088918339985515 22.963508036553606 40 23.875807122713475 25.869920327934537 27.706846866283456 22.547425683068532 41 21.478325191474934 23.61190303740118 30.07235209813379 24.83741967299009 42 25.198794902220644 25.356752091969607 27.259558336287004 22.18489466952274 43 21.654774930267678 25.03582931377233 29.02058837126874 24.288807384691253 44 24.355072352098134 23.425051239771307 26.859271701776827 25.360604706353733 45 24.229091861737377 25.146014085158185 27.820498990615032 22.804395062489405 46 21.02756930853277 24.506865358832503 31.489728930051935 22.975836402582793 47 21.410133916875992 25.655329706738993 28.016982324205202 24.91755405217981 48 21.927154767225037 24.2394939205745 31.640366152471067 22.192985159729393 49 24.319628299764222 23.085635912530243 28.443466736527405 24.15126905117813 50 20.865759504399687 24.006025488896764 28.12678183415266 27.001433172550893 51 21.71680202185203 23.30831702393244 30.429874712980226 24.5450062412353 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 2000.0 1 1615.5 2 1231.0 3 830.5 4 430.0 5 390.0 6 350.0 7 363.0 8 376.0 9 377.5 10 379.0 11 471.0 12 563.0 13 654.5 14 746.0 15 745.0 16 744.0 17 811.0 18 878.0 19 897.0 20 916.0 21 1102.0 22 1288.0 23 1260.5 24 1233.0 25 1712.5 26 2288.0 27 2384.0 28 2931.5 29 3479.0 30 3990.5 31 4502.0 32 5119.0 33 5736.0 34 6234.0 35 6732.0 36 7626.0 37 8520.0 38 9150.5 39 9781.0 40 10706.0 41 11631.0 42 13847.0 43 16063.0 44 19413.0 45 22763.0 46 24494.5 47 26226.0 48 27106.5 49 27987.0 50 26433.0 51 24879.0 52 22493.5 53 20108.0 54 17893.5 55 15679.0 56 13301.0 57 10923.0 58 9892.0 59 8861.0 60 7824.5 61 6788.0 62 5626.0 63 4464.0 64 3890.5 65 3317.0 66 2792.0 67 2267.0 68 1690.5 69 1114.0 70 920.5 71 727.0 72 631.0 73 535.0 74 421.0 75 287.0 76 267.0 77 187.0 78 107.0 79 71.5 80 36.0 81 25.0 82 14.0 83 11.0 84 8.0 85 4.5 86 1.0 87 9.5 88 18.0 89 11.0 90 4.0 91 5.5 92 7.0 93 4.0 94 1.0 95 1.0 96 1.0 97 1.0 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 259564.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 34.82763403245443 #Duplication Level Percentage of deduplicated Percentage of total 1 77.4391592920354 26.970226996039514 2 9.455752212389381 6.586429551093372 3 3.3451327433628317 3.4950917692746297 4 1.598451327433628 2.226811114021975 5 1.0254424778761062 1.7856867670401135 6 0.7289823008849557 1.5233237274814688 7 0.5752212389380531 1.4023516358200676 8 0.42477876106194695 1.183523138801991 9 0.37610619469026546 1.1789000015410456 >10 4.422566371681416 34.34181935861676 >50 0.538716814159292 12.454346519548166 >100 0.06305309734513274 3.792128338290364 >500 0.0011061946902654867 0.25619885654405083 >1k 0.0055309734513274336 2.803162225886487 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CTGTCTCTTATACACATCTGACGCTTGCTTCGTCGTATGCCGTCTTCTGCT 1985 0.7647439552480313 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1696 0.6534033995469326 No Hit AATGATACCTGTCTCTTATACACATCTGACGCTTGCTTCGTCGTATGCCGT 1240 0.477724183631012 No Hit AATGATACGGCTGTCTCTTATACACATCTGACGCTTGCTTCGTCGTATGCC 1211 0.4665516019170609 No Hit AATCTGTCTCTTATACACATCTGACGCTTGCTTCGTCGTATGCCGTCTTCT 1144 0.4407390855434498 No Hit AAACTGTCTCTTATACACATCTGACGCTTGCTTCGTCGTATGCCGTCTTCT 665 0.25619885654405083 No Hit AAAAACTGTCTCTTATACACATCTGACGCTTGCTTCGTCGTATGCCGTCTT 498 0.19186019632922902 No Hit CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 489 0.18839284338352005 No Hit CCTGTCTCTTATACACATCTGACGCTTGCTTCGTCGTATGCCGTCTTCTGC 458 0.17644973879274475 No Hit GCTCTAGGGATTTGGAGAAAGAAGATTAGAAAATGGAAGTGAAAGACGAAG 354 0.1363825491978857 No Hit GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 320 0.12328366029187407 No Hit AATGACTGTCTCTTATACACATCTGACGCTTGCTTCGTCGTATGCCGTCTT 308 0.11866052303092878 No Hit AAAAAACTGTCTCTTATACACATCTGACGCTTGCTTCGTCGTATGCCGTCT 278 0.1071026798785656 No Hit AATGATCTGTCTCTTATACACATCTGACGCTTGCTTCGTCGTATGCCGTCT 272 0.10479111124809297 No Hit AACTGTCTCTTATACACATCTGACGCTTGCTTCGTCGTATGCCGTCTTCTG 268 0.10325006549444453 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 7.705228768242129E-4 0.0 0.0 0.8444930729993374 0.0 2 7.705228768242129E-4 0.0 0.0 1.251714413400934 0.0 3 7.705228768242129E-4 0.0 0.0 1.7124870937418133 0.0 4 7.705228768242129E-4 0.0 0.0 3.8410565409687014 0.0 5 7.705228768242129E-4 0.0 0.0 4.1847097440323004 0.0 6 7.705228768242129E-4 0.0 0.0 5.738854386586738 0.0 7 7.705228768242129E-4 0.0 0.0 6.909278636482717 0.0 8 7.705228768242129E-4 0.0 0.0 7.857792297853323 0.0 9 7.705228768242129E-4 0.0 0.0 9.465488280347044 0.0 10 7.705228768242129E-4 0.0 0.0 11.390639688092339 0.0 11 7.705228768242129E-4 0.0 0.0 13.279191259188485 0.0 12 7.705228768242129E-4 0.0 0.0 14.111355966158635 0.0 13 7.705228768242129E-4 0.0 0.0 14.533987764096716 0.0 14 7.705228768242129E-4 0.0 0.0 14.959701653542094 0.0 15 7.705228768242129E-4 0.0 0.0 15.316068484073293 0.0 16 7.705228768242129E-4 0.0 0.0 15.999137014377958 0.0 17 7.705228768242129E-4 0.0 0.0 16.944953845679677 0.0 18 7.705228768242129E-4 0.0 0.0 18.372347474996534 0.0 19 7.705228768242129E-4 0.0 0.0 18.87472839068592 0.0 20 7.705228768242129E-4 0.0 0.0 19.543542247769338 0.0 21 7.705228768242129E-4 0.0 0.0 20.071350418393923 0.0 22 7.705228768242129E-4 0.0 0.0 20.673899308070457 0.0 23 7.705228768242129E-4 0.0 0.0 21.23445470096007 0.0 24 7.705228768242129E-4 0.0 0.0 21.621642446564238 0.0 25 0.0011557843152363194 0.0 0.0 21.98378819867162 0.0 26 0.0011557843152363194 0.0 0.0 22.338613983449168 0.0 27 0.0011557843152363194 0.0 0.0 22.778967807554206 0.0 28 0.0011557843152363194 0.0 0.0 23.157294540074894 0.0 29 0.0011557843152363194 0.0 0.0 23.570294802052672 0.0 30 0.0011557843152363194 0.0 0.0 24.224083463038017 0.0 31 0.0011557843152363194 0.0 0.0 24.63246058775485 0.0 32 0.0011557843152363194 0.0 0.0 25.043149281102156 0.0 33 0.0011557843152363194 0.0 0.0 25.421476013622843 0.0 34 0.0011557843152363194 0.0 0.0 25.80249957621242 0.0 35 0.0011557843152363194 0.0 0.0 26.17812947866422 0.0 36 0.0011557843152363194 0.0 0.0 26.56146460988427 0.0 37 0.0011557843152363194 0.0 0.0 26.95520179994144 0.0 38 0.0011557843152363194 0.0 0.0 27.34662742136814 0.0 39 0.0011557843152363194 0.0 0.0 27.75307823889291 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCGCCCA 20 7.023184E-4 45.000004 17 CGGGTCC 20 7.023184E-4 45.000004 6 CTAGAAT 20 7.023184E-4 45.000004 28 GCCCATT 20 7.023184E-4 45.000004 40 AGTCCGT 20 7.023184E-4 45.000004 37 ATCTACA 20 7.023184E-4 45.000004 10 GTCGAAC 20 7.023184E-4 45.000004 36 ATAGGCG 20 7.023184E-4 45.000004 1 CACGGAG 20 7.023184E-4 45.000004 22 GCGAATG 20 7.023184E-4 45.000004 1 GAGTCCG 20 7.023184E-4 45.000004 36 GGGTCGT 20 7.023184E-4 45.000004 8 GATCCGT 20 7.023184E-4 45.000004 30 ACTTCGC 20 7.023184E-4 45.000004 14 GTTAGGT 20 7.023184E-4 45.000004 18 TTCAACG 20 7.023184E-4 45.000004 1 TGAGTCC 20 7.023184E-4 45.000004 14 ACCTCGT 20 7.023184E-4 45.000004 10 ATCCGTT 20 7.023184E-4 45.000004 31 CGTTAGC 20 7.023184E-4 45.000004 32 >>END_MODULE