SRR3548424_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548424_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	574128
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCGACGATACTCGTATGCCGTCTTCTGCT	3922	0.6831229272914751	TruSeq Adapter, Index 23 (95% over 22bp)
AATGATACGGCTGTCTCTTATACACATCTGACGCGACGATACTCGTATGCC	3808	0.6632667279770365	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCGACGATACTCGTATGCCGT	3714	0.646894072401973	No Hit
AATCTGTCTCTTATACACATCTGACGCGACGATACTCGTATGCCGTCTTCT	3232	0.5629406682830309	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1868	0.3253629852576429	No Hit
AAACTGTCTCTTATACACATCTGACGCGACGATACTCGTATGCCGTCTTCT	1043	0.18166680600841625	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	981	0.17086782041635315	No Hit
AATGACTGTCTCTTATACACATCTGACGCGACGATACTCGTATGCCGTCTT	853	0.14857314048435194	No Hit
AATGATCTGTCTCTTATACACATCTGACGCGACGATACTCGTATGCCGTCT	801	0.1395159267619764	No Hit
AAAAACTGTCTCTTATACACATCTGACGCGACGATACTCGTATGCCGTCTT	717	0.12488504305660061	No Hit
AACTGTCTCTTATACACATCTGACGCGACGATACTCGTATGCCGTCTTCTG	702	0.12227238525206922	No Hit
CCTGTCTCTTATACACATCTGACGCGACGATACTCGTATGCCGTCTTCTGC	668	0.1163503608951314	TruSeq Adapter, Index 20 (95% over 21bp)
TGTATGGGGTCAGAGATTGTATTTGTTTGTTTAATTTTTTACTGTTTGAGG	593	0.10328707187247443	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTTAGCG	35	1.210501E-7	45.000004	1
TAAACGT	35	1.210501E-7	45.000004	18
TAACGGT	35	1.210501E-7	45.000004	19
CCCGTTC	35	1.210501E-7	45.000004	16
CCCCGTT	35	1.210501E-7	45.000004	15
CGGTCTA	35	1.210501E-7	45.000004	31
CCGTTCG	35	1.210501E-7	45.000004	17
TATCACG	45	3.8380676E-10	45.0	1
CAGAACG	75	0.0	45.0	1
CTCGTCA	50	2.1827873E-11	45.0	36
AATCACG	45	3.8380676E-10	45.0	1
ATCTACG	20	7.0303347E-4	45.0	1
GGTCGAT	20	7.0303347E-4	45.0	15
CGACGTA	20	7.0303347E-4	45.0	3
CATGCGT	20	7.0303347E-4	45.0	13
ACGTTCA	20	7.0303347E-4	45.0	31
CCGATCG	20	7.0303347E-4	45.0	26
TTTCGCT	20	7.0303347E-4	45.0	15
CGTGACC	20	7.0303347E-4	45.0	39
GACCGGT	20	7.0303347E-4	45.0	21