SRR3548422_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548422_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	651269
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AATGATACCTGTCTCTTATACACATCTGACGCTCCTTGGTTCGTATGCCGT	10917	1.676265874776782	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCTCCTTGGTTCGTATGCC	10898	1.6733484934796528	No Hit
AATCTGTCTCTTATACACATCTGACGCTCCTTGGTTCGTATGCCGTCTTCT	9298	1.4276742789845671	No Hit
CTGTCTCTTATACACATCTGACGCTCCTTGGTTCGTATGCCGTCTTCTGCT	4785	0.7347194477243658	Illumina Single End Adapter 2 (95% over 21bp)
AATGACTGTCTCTTATACACATCTGACGCTCCTTGGTTCGTATGCCGTCTT	2636	0.4047482683806538	No Hit
AATGATCTGTCTCTTATACACATCTGACGCTCCTTGGTTCGTATGCCGTCT	2074	0.3184552005392549	No Hit
AATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTCCTTGGTTC	1700	0.2610288529010286	No Hit
AACTGTCTCTTATACACATCTGACGCTCCTTGGTTCGTATGCCGTCTTCTG	1649	0.2531979873139978	No Hit
AATGATACGGCGACTGTCTCTTATACACATCTGACGCTCCTTGGTTCGTAT	1478	0.22694155563983548	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1395	0.2141972057629029	No Hit
AAACTGTCTCTTATACACATCTGACGCTCCTTGGTTCGTATGCCGTCTTCT	788	0.12099455063882972	No Hit
CCTGTCTCTTATACACATCTGACGCTCCTTGGTTCGTATGCCGTCTTCTGC	788	0.12099455063882972	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	761	0.11684879826922515	No Hit
AATGCTGTCTCTTATACACATCTGACGCTCCTTGGTTCGTATGCCGTCTTC	722	0.11086048929090744	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCACGCA	20	7.0310314E-4	45.000004	24
CAGCGCG	20	7.0310314E-4	45.000004	1
GATACGT	20	7.0310314E-4	45.000004	9
CGTATAG	30	2.1640462E-6	45.000004	1
TCCGATC	20	7.0310314E-4	45.000004	35
ACTTGCG	20	7.0310314E-4	45.000004	1
GACGTCG	20	7.0310314E-4	45.000004	1
GATCACG	20	7.0310314E-4	45.000004	1
ATCGTTA	20	7.0310314E-4	45.000004	22
AATTGCG	40	6.8066583E-9	45.000004	1
CTACGAA	30	2.1640462E-6	45.000004	10
CTTGCCG	20	7.0310314E-4	45.000004	1
GCTTACG	30	2.1640462E-6	45.000004	1
CGTACCG	20	7.0310314E-4	45.000004	1
ACGTCCA	20	7.0310314E-4	45.000004	45
AGCTACG	30	2.1640462E-6	45.000004	8
TCGACCA	20	7.0310314E-4	45.000004	14
TATGTCG	20	7.0310314E-4	45.000004	1
CGAGTCA	25	3.8889375E-5	45.0	14
CCGATCA	25	3.8889375E-5	45.0	17