SRR3548420_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548420_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	364001
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCCTTCTCTGTCGTATGCCGTCTTCTGCT	3380	0.9285688775580286	TruSeq Adapter, Index 13 (95% over 22bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1800	0.4945041359776485	No Hit
AAACTGTCTCTTATACACATCTGACGCCTTCTCTGTCGTATGCCGTCTTCT	1379	0.3788451130628762	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCCTTCTCTGTCGTATGCCGT	1269	0.34862541586424217	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCCTTCTCTGTCGTATGCC	1267	0.34807596682426695	No Hit
AATCTGTCTCTTATACACATCTGACGCCTTCTCTGTCGTATGCCGTCTTCT	1257	0.34532872162439116	No Hit
AAAAACTGTCTCTTATACACATCTGACGCCTTCTCTGTCGTATGCCGTCTT	969	0.26620805986796736	No Hit
CCTGTCTCTTATACACATCTGACGCCTTCTCTGTCGTATGCCGTCTTCTGC	613	0.16840613075238806	TruSeq Adapter, Index 16 (95% over 21bp)
AAAAAACTGTCTCTTATACACATCTGACGCCTTCTCTGTCGTATGCCGTCT	571	0.15686770091290958	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	438	0.1203293397545611	No Hit
GAAAAACTGTCTCTTATACACATCTGACGCCTTCTCTGTCGTATGCCGTCT	376	0.10329641951533101	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCCCCGT	20	7.026927E-4	45.000004	20
AACGTCC	20	7.026927E-4	45.000004	22
TCCGCAT	20	7.026927E-4	45.000004	41
ATTAGCT	40	6.7921064E-9	45.000004	10
CAACGCT	20	7.026927E-4	45.000004	26
ACTTGCA	20	7.026927E-4	45.000004	31
ATAATCG	20	7.026927E-4	45.000004	1
GTCCTAA	20	7.026927E-4	45.000004	25
TAGCGTC	20	7.026927E-4	45.000004	14
CGGCACT	20	7.026927E-4	45.000004	35
CGGCAAC	20	7.026927E-4	45.000004	30
GGATCTC	20	7.026927E-4	45.000004	8
ACCGAGT	20	7.026927E-4	45.000004	25
ATGCTTC	20	7.026927E-4	45.000004	11
TTCGTGT	20	7.026927E-4	45.000004	12
CGACATT	20	7.026927E-4	45.000004	10
ATCACGT	20	7.026927E-4	45.000004	44
CGTTAAC	20	7.026927E-4	45.000004	5
GTTACAC	20	7.026927E-4	45.000004	9
GTAGCGT	20	7.026927E-4	45.000004	13