SRR3548412_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548412_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	256750
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCATAGCAGGTCGTATGCCGTCTTCTGCT	1552	0.6044790652385589	Illumina Single End Adapter 2 (95% over 22bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1308	0.5094449853943525	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCATAGCAGGTCGTATGCC	901	0.35092502434274586	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCATAGCAGGTCGTATGCCGT	809	0.3150925024342746	No Hit
AAACTGTCTCTTATACACATCTGACGCATAGCAGGTCGTATGCCGTCTTCT	694	0.27030185004868545	No Hit
AATCTGTCTCTTATACACATCTGACGCATAGCAGGTCGTATGCCGTCTTCT	677	0.2636806231742941	No Hit
AAAAACTGTCTCTTATACACATCTGACGCATAGCAGGTCGTATGCCGTCTT	549	0.21382667964946447	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	396	0.1542356377799416	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	341	0.13281402142161636	No Hit
TACAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	335	0.13047711781889	No Hit
CCTGTCTCTTATACACATCTGACGCATAGCAGGTCGTATGCCGTCTTCTGC	323	0.1258033106134372	Illumina Single End Adapter 2 (95% over 21bp)
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	310	0.12074001947419669	No Hit
AAAAAACTGTCTCTTATACACATCTGACGCATAGCAGGTCGTATGCCGTCT	267	0.10399221032132425	No Hit
GAAAAACTGTCTCTTATACACATCTGACGCATAGCAGGTCGTATGCCGTCT	262	0.10204479065238559	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGATCGT	20	7.023042E-4	45.000004	28
TTGATAT	20	7.023042E-4	45.000004	37
CTTCGCG	20	7.023042E-4	45.000004	28
TAGAGTC	20	7.023042E-4	45.000004	33
TTCTACG	20	7.023042E-4	45.000004	1
CCCCTAT	20	7.023042E-4	45.000004	28
CGTATTT	20	7.023042E-4	45.000004	34
ATTAGTG	20	7.023042E-4	45.000004	24
GATCGTG	20	7.023042E-4	45.000004	29
TTGTGTC	30	2.1588949E-6	45.000004	39
CAAGTAT	20	7.023042E-4	45.000004	42
ACCATTA	20	7.023042E-4	45.000004	10
CCCTATA	20	7.023042E-4	45.000004	29
TTAGCCA	20	7.023042E-4	45.000004	39
TGGACGT	20	7.023042E-4	45.000004	28
GACGTGA	20	7.023042E-4	45.000004	30
TAGGTAT	20	7.023042E-4	45.000004	19
TTAGAGT	20	7.023042E-4	45.000004	32
TATGGGC	30	2.1588949E-6	45.000004	4
GGCCGTA	30	2.1588949E-6	45.000004	42