SRR3548406_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548406_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	386143
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCTAGTCACCTCGTATGCCGTCTTCTGCT	2521	0.6528669430754928	TruSeq Adapter, Index 7 (95% over 24bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1389	0.35971129866396645	No Hit
TGCTAGGGGAATGATACGGCTGTCTCTTATACACATCTGACGCTAGTCACC	877	0.22711793299373548	No Hit
TGCTAGGGGAATGATACCTGTCTCTTATACACATCTGACGCTAGTCACCTC	817	0.2115796479542553	No Hit
AATCTGTCTCTTATACACATCTGACGCTAGTCACCTCGTATGCCGTCTTCT	778	0.2014797626785932	TruSeq Adapter, Index 7 (95% over 21bp)
AAACTGTCTCTTATACACATCTGACGCTAGTCACCTCGTATGCCGTCTTCT	770	0.19940799133999582	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCTAGTCACCTCGTATGCCGT	693	0.17946719220599622	No Hit
TGCTAGGGCTGTCTCTTATACACATCTGACGCTAGTCACCTCGTATGCCGT	670	0.17351084960752883	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCTAGTCACCTCGTATGCC	664	0.1719570211035808	No Hit
AAAAACTGTCTCTTATACACATCTGACGCTAGTCACCTCGTATGCCGTCTT	651	0.1685903926783601	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	547	0.14165736527659442	No Hit
AGCCTGTCTCTTATACACATCTGACGCTAGTCACCTCGTATGCCGTCTTCT	451	0.1167961092134261	RNA PCR Primer, Index 7 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCTAGTCACCTCGTATGCCGTCTTCTGC	448	0.1160191949614521	RNA PCR Primer, Index 7 (95% over 23bp)
AGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	444	0.11498330929215342	No Hit
TGCTAGGGGAATGATCTGTCTCTTATACACATCTGACGCTAGTCACCTCGT	399	0.10332959551254328	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GATACGA	25	3.885977E-5	45.000004	32
CGAACAG	65	0.0	45.000004	1
CGCGCCA	25	3.885977E-5	45.000004	22
ATAGATC	25	3.885977E-5	45.000004	11
CGACACG	25	3.885977E-5	45.000004	1
TGCATAA	25	3.885977E-5	45.000004	22
GCCGATG	50	2.1827873E-11	45.000004	9
ATATCCG	25	3.885977E-5	45.000004	1
ATTCACG	25	3.885977E-5	45.000004	1
AGACCGA	25	3.885977E-5	45.000004	45
AGACCAC	25	3.885977E-5	45.000004	45
GTCAAGC	25	3.885977E-5	45.000004	16
CTACCGG	50	2.1827873E-11	45.000004	2
TTAGTCT	25	3.885977E-5	45.000004	14
GAATTCG	25	3.885977E-5	45.000004	12
TATCGAC	25	3.885977E-5	45.000004	34
TATCCGG	25	3.885977E-5	45.000004	2
GTCATAC	20	7.0274604E-4	45.0	9
AGTCCAA	20	7.0274604E-4	45.0	20
TCGCACG	20	7.0274604E-4	45.0	1