SRR3548401_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548401_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	500879
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCAGTGCCATTCGTATGCCGTCTTCTGCT	2790	0.5570207575083005	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1893	0.3779355892341264	No Hit
AAACTGTCTCTTATACACATCTGACGCAGTGCCATTCGTATGCCGTCTTCT	1078	0.21522164035625369	No Hit
AAAAACTGTCTCTTATACACATCTGACGCAGTGCCATTCGTATGCCGTCTT	896	0.17888551925714594	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	889	0.17748797613794948	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCAGTGCCATTCGTATGCC	773	0.154328690162694	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCAGTGCCATTCGTATGCCGT	747	0.14913781571996432	No Hit
AATCTGTCTCTTATACACATCTGACGCAGTGCCATTCGTATGCCGTCTTCT	740	0.14774027260076786	No Hit
CCTGTCTCTTATACACATCTGACGCAGTGCCATTCGTATGCCGTCTTCTGC	689	0.13755817273233656	No Hit
TCTCACGGGGAGTTGGTGTAAACATGCCATGTAATAAATGATTTCCAGTTA	523	0.10441643590567783	No Hit
AGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	502	0.10022380654808845	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTATGCG	65	0.0	45.000004	1
ACTATGC	30	2.1630403E-6	45.000004	4
CCTTAGT	30	2.1630403E-6	45.000004	17
AATCCGA	30	2.1630403E-6	45.000004	32
CCCTCGT	30	2.1630403E-6	45.000004	10
CCAATCG	30	2.1630403E-6	45.000004	39
TATGCAT	30	2.1630403E-6	45.000004	11
ATCCGAA	30	2.1630403E-6	45.000004	33
CCCAATC	30	2.1630403E-6	45.000004	38
AATCTAG	30	2.1630403E-6	45.000004	1
ATGCGAG	30	2.1630403E-6	45.000004	1
CAATACG	30	2.1630403E-6	45.000004	1
GATAGCG	45	3.8380676E-10	45.000004	1
TCACGCG	55	1.8189894E-12	45.0	1
ACAACGC	20	7.02947E-4	45.0	14
CTAGATC	25	3.887644E-5	45.0	23
TTGATAC	20	7.02947E-4	45.0	34
TTTAGCG	25	3.887644E-5	45.0	1
AACGTAG	20	7.02947E-4	45.0	1
ATGATTA	25	3.887644E-5	45.0	32