SRR3548397_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548397_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	387953
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCAAACGACGTCGTATGCCGTCTTCTGCT	1698	0.4376818841457599	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCAAACGACGTCGTATGCCGT	1125	0.28998358048526496	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCAAACGACGTCGTATGCC	1063	0.27400226316074366	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	925	0.23843094395455117	No Hit
AATCTGTCTCTTATACACATCTGACGCAAACGACGTCGTATGCCGTCTTCT	860	0.22167633708206924	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	794	0.20466396702693368	No Hit
GCAGGAGGGAAGGACAAAGAGGTGCAGACAGCACTGGTGGTGGGGTGGAAG	544	0.14022317136354145	No Hit
AAACTGTCTCTTATACACATCTGACGCAAACGACGTCGTATGCCGTCTTCT	453	0.1167667217420667	No Hit
AGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	394	0.10155869396550614	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AACGTTG	20	7.027502E-4	45.0	32
GTGTTAA	20	7.027502E-4	45.0	44
CGGAACA	25	3.8860126E-5	45.0	27
TCGTTGA	35	1.209155E-7	45.0	24
GATCGTG	35	1.209155E-7	45.0	10
CGTATAA	20	7.027502E-4	45.0	36
GTTTCGA	20	7.027502E-4	45.0	30
TCCGATA	20	7.027502E-4	45.0	29
GGGTCGA	20	7.027502E-4	45.0	8
CGGCCGA	20	7.027502E-4	45.0	39
TTTCGCG	25	3.8860126E-5	45.0	1
TAGGTGA	20	7.027502E-4	45.0	25
TTAGACG	20	7.027502E-4	45.0	21
CGTGAAT	20	7.027502E-4	45.0	27
TGGCGTG	20	7.027502E-4	45.0	32
TTGTCGG	25	3.8860126E-5	45.0	2
TAAACGT	25	3.8860126E-5	45.0	42
TAAACGA	20	7.027502E-4	45.0	22
ATTGTCG	25	3.8860126E-5	45.0	1
GATCACG	25	3.8860126E-5	45.0	1