##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3548397_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 387953 Sequences flagged as poor quality 0 Sequence length 51 %GC 50 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.964825636095092 33.0 31.0 34.0 30.0 34.0 2 32.161573695782735 34.0 31.0 34.0 30.0 34.0 3 32.29909035372842 34.0 31.0 34.0 30.0 34.0 4 35.923776849257514 37.0 35.0 37.0 35.0 37.0 5 35.725126497281884 37.0 35.0 37.0 35.0 37.0 6 35.73488541137715 37.0 35.0 37.0 33.0 37.0 7 35.77090008325751 37.0 35.0 37.0 35.0 37.0 8 35.81947039976492 37.0 35.0 37.0 35.0 37.0 9 37.5127244795117 39.0 37.0 39.0 35.0 39.0 10 37.101076676813946 39.0 37.0 39.0 33.0 39.0 11 37.11661721909613 39.0 37.0 39.0 33.0 39.0 12 37.006856500658586 39.0 37.0 39.0 33.0 39.0 13 36.99668516547108 39.0 37.0 39.0 33.0 39.0 14 38.209401654324104 40.0 38.0 41.0 33.0 41.0 15 38.24291860096455 40.0 38.0 41.0 33.0 41.0 16 38.124607877758386 40.0 37.0 41.0 33.0 41.0 17 38.11862261665717 40.0 37.0 41.0 33.0 41.0 18 38.065531133926015 40.0 37.0 41.0 33.0 41.0 19 38.09838562918704 40.0 37.0 41.0 33.0 41.0 20 38.011223008972735 40.0 37.0 41.0 33.0 41.0 21 37.96586699935301 40.0 37.0 41.0 33.0 41.0 22 37.92831348127221 40.0 37.0 41.0 33.0 41.0 23 37.80469799176704 40.0 37.0 41.0 33.0 41.0 24 37.67405587790274 40.0 36.0 41.0 33.0 41.0 25 37.69271793232686 40.0 36.0 41.0 33.0 41.0 26 37.62681046415416 40.0 36.0 41.0 33.0 41.0 27 37.53610360017837 40.0 36.0 41.0 33.0 41.0 28 37.43509394179192 40.0 36.0 41.0 32.0 41.0 29 37.283719935146785 39.0 36.0 41.0 32.0 41.0 30 37.300853453897766 39.0 36.0 41.0 32.0 41.0 31 37.241049817890314 39.0 36.0 41.0 32.0 41.0 32 37.15799336517568 39.0 35.0 41.0 32.0 41.0 33 37.0505602482775 39.0 35.0 41.0 31.0 41.0 34 36.987184014558466 39.0 35.0 41.0 31.0 41.0 35 36.90645000811954 39.0 35.0 41.0 31.0 41.0 36 36.79384616177733 39.0 35.0 41.0 31.0 41.0 37 36.72752369488057 39.0 35.0 41.0 31.0 41.0 38 36.629068469634205 39.0 35.0 41.0 31.0 41.0 39 36.5795753609329 39.0 35.0 41.0 30.0 41.0 40 36.44264640304367 39.0 35.0 41.0 30.0 41.0 41 36.342459009209875 39.0 35.0 40.0 30.0 41.0 42 36.26174304619374 39.0 35.0 40.0 30.0 41.0 43 36.17050519006168 38.0 35.0 40.0 30.0 41.0 44 36.088224604526836 38.0 35.0 40.0 30.0 41.0 45 35.90533647117048 38.0 35.0 40.0 29.0 41.0 46 35.734483300812215 38.0 35.0 40.0 28.0 41.0 47 35.58065023340456 38.0 34.0 40.0 28.0 41.0 48 35.52510226754272 38.0 34.0 40.0 28.0 41.0 49 35.345629496356516 37.0 34.0 40.0 28.0 41.0 50 35.22404260309883 37.0 34.0 40.0 27.0 41.0 51 33.988398079148766 36.0 32.0 39.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 1.0 10 2.0 11 6.0 12 7.0 13 7.0 14 16.0 15 28.0 16 49.0 17 76.0 18 157.0 19 308.0 20 522.0 21 766.0 22 1063.0 23 1424.0 24 1787.0 25 2215.0 26 2650.0 27 3333.0 28 4041.0 29 5156.0 30 6682.0 31 8708.0 32 11237.0 33 15163.0 34 23984.0 35 30229.0 36 35547.0 37 51455.0 38 79359.0 39 101952.0 40 22.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 20.96052872384026 31.130317332254165 20.873662531286005 27.03549141261957 2 24.710983031449686 30.918178232930277 19.187118027183704 25.18372070843633 3 21.4799215368872 30.489002533812087 20.547076578863933 27.48399935043678 4 22.36327596384098 30.311403700963773 19.03787314442729 28.287447190767956 5 18.84506628380242 34.48613620722098 16.48472882024369 30.184068688732914 6 19.971233628815863 37.31379832093063 19.892615858106524 22.822352192146987 7 85.36652635757424 6.047124265052725 4.693867556121488 3.8924818212515437 8 86.92186940170588 4.4690980608475765 3.7465878598696234 4.862444677576923 9 80.57496655522705 7.523334012109714 7.130245158563022 4.771454274100213 10 37.05216869053726 33.00064698558846 13.3219745690844 16.625209754789886 11 27.854920570275265 29.542238363925527 22.636504937453765 19.966336128345443 12 27.024923122130772 24.773877248017158 28.861228035354795 19.33997159449727 13 26.887019819411112 24.616899469781135 27.062041020432886 21.434039690374863 14 22.848128510412344 27.544831461543023 28.142326518933995 21.464713509110638 15 20.995842279863798 28.23357468559336 27.597930677169657 23.172652357373185 16 23.54847107768209 27.40486605336213 27.061525494067578 21.985137374888193 17 22.998146682716722 26.053671449892125 26.629256636757546 24.31892523063361 18 25.043239773890136 26.1531680383964 24.946320817212396 23.857271370501067 19 23.879696767391927 30.150817238170603 24.518949460372777 21.450536534064693 20 24.809964093588658 28.447775890378473 23.49227870386361 23.249981312169258 21 25.745644446621114 27.168497214868815 25.171863602034268 21.91399473647581 22 23.97171822359925 26.142599747907607 24.09157810353316 25.794103924959984 23 23.01026155230144 28.334617853193556 24.26840364683351 24.3867169476715 24 22.021739746825002 28.617641827747175 25.3260059852611 24.034612440166722 25 24.49033774709823 27.702324766144354 22.828796271713326 24.97854121504409 26 25.58299587836671 27.66804226285143 23.070835900225028 23.678125958556837 27 22.029988168669917 26.46325714712865 25.692545230994472 25.81420945320696 28 22.425654654043147 28.56815129667769 25.84256340329885 23.163630645980312 29 23.524756864877965 30.583601621845947 23.08423958572301 22.80740192755308 30 24.22716153760894 28.600371694509384 24.667678816763885 22.50478795111779 31 24.964622003180796 29.111773848894067 20.63780921915799 25.285794928767146 32 25.396890860490835 28.682855912958527 22.95613128394419 22.96412194260645 33 23.438406198689016 28.3632295664681 23.363139349354174 24.835224885488707 34 21.122919528912007 29.24400636159535 24.949156212221585 24.68391789727106 35 23.460831595579876 28.64367590919519 24.784445538505953 23.111046956718983 36 24.081783102592325 30.003634460875418 23.517797258946317 22.396785177585947 37 23.62915095385266 29.801032599309714 21.634837209661995 24.934979237175636 38 24.429247872809334 28.96587988751215 23.253332233543755 23.351540006134762 39 23.738442543297772 25.49355205398592 23.97171822359925 26.796287179117055 40 24.539054988619753 25.972476047356253 24.280260753235574 25.20820821078842 41 22.5813436163659 24.867187520137747 26.74447677940369 25.806992084092663 42 24.299335228751936 27.19014932221171 23.82144228811222 24.68907316092413 43 22.676973757130376 26.101357638683037 25.169543733390388 26.052124870796206 44 24.120705343173015 24.22819259033955 24.92569976260011 26.725402303887325 45 26.000829997448143 24.939361211280747 25.37008348949486 23.689725301776246 46 22.78136784610507 26.125587377852472 26.90171232082237 24.191332455220092 47 21.924563026964606 28.21269586779842 25.451536655213392 24.411204450023586 48 22.858181274535834 25.81240511092839 26.937799166393866 24.39161444814191 49 23.6033746355873 25.759563658484403 26.19750330581282 24.439558400115477 50 22.214031081084563 25.947988545004165 26.68029374692295 25.15768662698832 51 23.797212548942785 23.929187298461414 26.909187453119323 25.364412699476485 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1257.0 1 1010.5 2 764.0 3 532.5 4 301.0 5 315.5 6 330.0 7 338.0 8 346.0 9 378.0 10 410.0 11 412.5 12 415.0 13 484.5 14 554.0 15 538.0 16 522.0 17 543.0 18 564.0 19 614.5 20 665.0 21 638.0 22 611.0 23 1038.0 24 1465.0 25 1669.5 26 2119.0 27 2364.0 28 3159.0 29 3954.0 30 4784.0 31 5614.0 32 6282.0 33 6950.0 34 7887.5 35 8825.0 36 10053.5 37 11282.0 38 11959.0 39 12636.0 40 13835.5 41 15035.0 42 16055.5 43 17076.0 44 20461.0 45 23846.0 46 26571.5 47 29297.0 48 31878.0 49 34459.0 50 35074.0 51 35689.0 52 32930.0 53 30171.0 54 27441.0 55 24711.0 56 23487.0 57 22263.0 58 20777.0 59 19291.0 60 18902.5 61 18514.0 62 17127.0 63 15740.0 64 13711.0 65 11682.0 66 9702.0 67 7722.0 68 6927.5 69 6133.0 70 5603.0 71 5073.0 72 4573.0 73 4073.0 74 3315.0 75 1920.0 76 1283.0 77 1063.0 78 843.0 79 632.5 80 422.0 81 311.0 82 200.0 83 151.5 84 103.0 85 69.5 86 36.0 87 26.0 88 16.0 89 12.0 90 8.0 91 5.5 92 3.0 93 2.0 94 1.0 95 1.0 96 1.0 97 1.0 98 1.0 99 1.0 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 387953.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 24.6542751312659 #Duplication Level Percentage of deduplicated Percentage of total 1 77.69611174422616 19.155413155717316 2 8.575282026618712 4.228347248249144 3 3.041391784373791 2.2494992950176953 4 1.4762616705176326 1.455846455627357 5 0.8803203446004579 1.085182998971525 6 0.6461258586259894 0.9557858812794332 7 0.4621159053603354 0.7975192871301421 8 0.3805660397085115 0.7506063878871925 9 0.31783537382249316 0.7052400677401643 >10 4.558428387717336 27.715212925277033 >50 1.6215877131535752 28.209602709606575 >100 0.33665457358829864 10.88508144027756 >500 0.0041820443924012254 0.8049944194270955 >1k 0.003136533294300919 1.0016677277917685 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CTGTCTCTTATACACATCTGACGCAAACGACGTCGTATGCCGTCTTCTGCT 1698 0.4376818841457599 No Hit AATGATACCTGTCTCTTATACACATCTGACGCAAACGACGTCGTATGCCGT 1125 0.28998358048526496 No Hit AATGATACGGCTGTCTCTTATACACATCTGACGCAAACGACGTCGTATGCC 1063 0.27400226316074366 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 925 0.23843094395455117 No Hit AATCTGTCTCTTATACACATCTGACGCAAACGACGTCGTATGCCGTCTTCT 860 0.22167633708206924 No Hit TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG 794 0.20466396702693368 No Hit GCAGGAGGGAAGGACAAAGAGGTGCAGACAGCACTGGTGGTGGGGTGGAAG 544 0.14022317136354145 No Hit AAACTGTCTCTTATACACATCTGACGCAAACGACGTCGTATGCCGTCTTCT 453 0.1167667217420667 No Hit AGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT 394 0.10155869396550614 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.5083089961928378 0.0 2 0.0 0.0 0.0 0.6766283544656183 0.0 3 0.0 0.0 0.0 0.8810345583098984 0.0 4 0.0 0.0 0.0 1.9726616368477625 0.0 5 0.0 0.0 0.0 2.142269811033811 0.0 6 0.0 0.0 0.0 3.045987529417223 0.0 7 0.0 0.0 0.0 3.6973550919827916 0.0 8 0.0 0.0 0.0 4.3541356813840855 0.0 9 0.0 0.0 0.0 5.253986952027694 0.0 10 0.0 0.0 0.0 6.335303503259415 0.0 11 0.0 0.0 0.0 7.38362636711148 0.0 12 0.0 0.0 0.0 7.859457202289968 0.0 13 0.0 0.0 0.0 8.072369591161817 0.0 14 0.0 0.0 0.0 8.320337772874549 0.0 15 0.0 0.0 0.0 8.517526607604529 0.0 16 0.0 0.0 0.0 8.940515990339035 0.0 17 0.0 0.0 0.0 9.404747482298113 0.0 18 0.0 0.0 0.0 10.27701809239779 0.0 19 0.0 0.0 0.0 10.517253378630917 0.0 20 0.0 0.0 0.0 10.871677754779574 0.0 21 0.0 0.0 0.0 11.15882594025565 0.0 22 0.0 0.0 0.0 11.454738073941947 0.0 23 0.0 0.0 0.0 11.77410665724972 0.0 24 0.0 0.0 0.0 12.017692864857342 0.0 25 0.0 0.0 0.0 12.221325779153661 0.0 26 0.0 0.0 0.0 12.406399744298923 0.0 27 0.0 0.0 0.0 12.671638059249446 0.0 28 0.0 0.0 0.0 12.887128079947828 0.0 29 0.0 0.0 0.0 13.123754681623804 0.0 30 0.0 0.0 0.0 13.488747348261258 0.0 31 0.0 0.0 0.0 13.708103816699445 0.0 32 0.0 0.0 0.0 13.938801865174389 0.0 33 0.0 0.0 0.0 14.171819782293216 0.0 34 0.0 0.0 0.0 14.401486778037546 0.0 35 0.0 0.0 0.0 14.646104038375782 0.0 36 0.0 0.0 0.0 14.87267787592827 0.0 37 0.0 0.0 0.0 15.078630658868471 0.0 38 0.0 0.0 0.0 15.30958647052607 0.0 39 0.0 0.0 0.0 15.545182019471431 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AACGTTG 20 7.027502E-4 45.0 32 GTGTTAA 20 7.027502E-4 45.0 44 CGGAACA 25 3.8860126E-5 45.0 27 TCGTTGA 35 1.209155E-7 45.0 24 GATCGTG 35 1.209155E-7 45.0 10 CGTATAA 20 7.027502E-4 45.0 36 GTTTCGA 20 7.027502E-4 45.0 30 TCCGATA 20 7.027502E-4 45.0 29 GGGTCGA 20 7.027502E-4 45.0 8 CGGCCGA 20 7.027502E-4 45.0 39 TTTCGCG 25 3.8860126E-5 45.0 1 TAGGTGA 20 7.027502E-4 45.0 25 TTAGACG 20 7.027502E-4 45.0 21 CGTGAAT 20 7.027502E-4 45.0 27 TGGCGTG 20 7.027502E-4 45.0 32 TTGTCGG 25 3.8860126E-5 45.0 2 TAAACGT 25 3.8860126E-5 45.0 42 TAAACGA 20 7.027502E-4 45.0 22 ATTGTCG 25 3.8860126E-5 45.0 1 GATCACG 25 3.8860126E-5 45.0 1 >>END_MODULE