SRR3548394_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548394_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	547210
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCCTCGTTTGTCGTATGCCGTCTTCTGCT	3269	0.597394053471245	TruSeq Adapter, Index 27 (95% over 23bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3066	0.5602967782021527	No Hit
AAACTGTCTCTTATACACATCTGACGCCTCGTTTGTCGTATGCCGTCTTCT	1361	0.24871621498145136	No Hit
AATCTGTCTCTTATACACATCTGACGCCTCGTTTGTCGTATGCCGTCTTCT	1353	0.24725425339449209	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCCTCGTTTGTCGTATGCC	1280	0.2339138539134884	No Hit
CAGCACGGGAATGATACTGTCTCTTATACACATCTGACGCCTCGTTTGTCG	1261	0.23044169514446008	No Hit
AAAAACTGTCTCTTATACACATCTGACGCCTCGTTTGTCGTATGCCGTCTT	1243	0.22715228157380163	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCCTCGTTTGTCGTATGCCGT	1220	0.22294914201129368	No Hit
CAGCACGGGAATGATACCTGTCTCTTATACACATCTGACGCCTCGTTTGTC	1071	0.19572010745417665	No Hit
CCTGTCTCTTATACACATCTGACGCCTCGTTTGTCGTATGCCGTCTTCTGC	929	0.16977028928564902	TruSeq Adapter, Index 20 (95% over 21bp)
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	866	0.15825734178834452	No Hit
CAGCACGGGAATGATACGGCTGTCTCTTATACACATCTGACGCCTCGTTTG	815	0.14893733667147896	No Hit
AAAAAACTGTCTCTTATACACATCTGACGCCTCGTTTGTCGTATGCCGTCT	695	0.12700791286708943	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	673	0.12298751850295132	No Hit
CAGCACGGGAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCC	643	0.11750516255185393	No Hit
CAGCACGGGAACTGTCTCTTATACACATCTGACGCCTCGTTTGTCGTATGC	593	0.1083679026333583	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	569	0.10398201787248039	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCACGCG	20	7.030042E-4	45.000004	1
AAATCGT	20	7.030042E-4	45.000004	43
CGAACAT	40	6.8030204E-9	45.000004	17
GATCGTA	20	7.030042E-4	45.000004	21
CACGGTA	20	7.030042E-4	45.000004	4
ACGTTGC	20	7.030042E-4	45.000004	11
ACGCATA	20	7.030042E-4	45.000004	20
TTAGCGT	20	7.030042E-4	45.000004	19
CGCATAG	20	7.030042E-4	45.000004	1
CGGCAAA	20	7.030042E-4	45.000004	11
GAATCGA	20	7.030042E-4	45.000004	24
CGTCTGA	20	7.030042E-4	45.000004	28
CGACACG	20	7.030042E-4	45.000004	1
GCGTTGA	20	7.030042E-4	45.000004	13
CCTCGCG	20	7.030042E-4	45.000004	36
ATCGTAC	20	7.030042E-4	45.000004	29
ATCGTAA	20	7.030042E-4	45.000004	17
ATCCGAG	20	7.030042E-4	45.000004	1
ACGATTC	20	7.030042E-4	45.000004	14
CCCGTTA	40	6.8030204E-9	45.000004	14