SRR3548392_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548392_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	331104
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGCCGTCTTCTGCT	1530	0.46209046100318935	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1478	0.446385425727264	No Hit
AAACTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGCCGTCTTCT	499	0.15070793466705326	No Hit
AATCTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGCCGTCTTCT	456	0.13772107857349958	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGCC	438	0.13228472020875615	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGCCGT	425	0.1283584613897748	No Hit
AGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	390	0.11778776456944041	No Hit
CCTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGCCGTCTTCTGC	366	0.11053928674978256	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	356	0.10751908765825842	No Hit
AAAAACTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGCCGTCTT	347	0.10480090847588674	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCCCTCG	25	3.8847695E-5	45.000004	1
CGAACTG	30	2.160803E-6	45.000004	1
TACCCGG	30	2.160803E-6	45.000004	2
CGTGCAC	30	2.160803E-6	45.000004	19
TATGGGA	200	0.0	45.000004	4
AATGCGA	50	2.1827873E-11	45.000004	31
GCTTCGC	30	2.160803E-6	45.000004	27
TCTCGTC	25	3.8847695E-5	45.000004	12
TATTCCG	30	2.160803E-6	45.000004	1
ACAATAT	30	2.160803E-6	45.000004	22
TTGGTAG	25	3.8847695E-5	45.000004	20
GACGCAT	25	3.8847695E-5	45.000004	34
ACTCACG	25	3.8847695E-5	45.000004	1
TCAACCG	25	3.8847695E-5	45.000004	1
TACCGAG	25	3.8847695E-5	45.000004	1
ATCCTAC	20	7.026005E-4	45.0	32
AAATCCG	20	7.026005E-4	45.0	40
CTCCGTC	20	7.026005E-4	45.0	15
CGAAATG	20	7.026005E-4	45.0	1
CGAAACG	20	7.026005E-4	45.0	1