##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3548392_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 331104 Sequences flagged as poor quality 0 Sequence length 51 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.860729559292547 33.0 31.0 34.0 30.0 34.0 2 32.04274789794143 33.0 31.0 34.0 30.0 34.0 3 32.21128708804484 34.0 31.0 34.0 30.0 34.0 4 35.85892046003673 37.0 35.0 37.0 35.0 37.0 5 35.63312131535711 37.0 35.0 37.0 33.0 37.0 6 34.98901553590413 37.0 35.0 37.0 33.0 37.0 7 35.3947037788731 37.0 35.0 37.0 33.0 37.0 8 35.762056634773366 37.0 35.0 37.0 35.0 37.0 9 37.3670900985793 39.0 37.0 39.0 35.0 39.0 10 36.98622789214265 39.0 37.0 39.0 33.0 39.0 11 37.02970667826423 39.0 37.0 39.0 33.0 39.0 12 36.961809582487675 39.0 37.0 39.0 33.0 39.0 13 36.90170460036725 39.0 37.0 39.0 33.0 39.0 14 38.08947641828549 40.0 37.0 41.0 33.0 41.0 15 38.166645525273026 40.0 37.0 41.0 33.0 41.0 16 38.050337658258435 40.0 37.0 41.0 33.0 41.0 17 38.019371556973034 40.0 37.0 41.0 33.0 41.0 18 37.93184014690248 40.0 37.0 41.0 33.0 41.0 19 37.95206642021842 40.0 37.0 41.0 33.0 41.0 20 37.86652532134919 40.0 37.0 41.0 33.0 41.0 21 37.854598555136754 40.0 37.0 41.0 33.0 41.0 22 37.80574683483135 40.0 36.0 41.0 33.0 41.0 23 37.70630073934474 40.0 36.0 41.0 33.0 41.0 24 37.59998369092491 39.0 36.0 41.0 33.0 41.0 25 37.56911121581135 39.0 36.0 41.0 32.0 41.0 26 37.580838648883734 39.0 36.0 41.0 33.0 41.0 27 37.497771093070455 39.0 36.0 41.0 33.0 41.0 28 37.32437542282787 39.0 36.0 41.0 32.0 41.0 29 36.97647566927612 39.0 35.0 41.0 31.0 41.0 30 37.06305571663284 39.0 35.0 41.0 31.0 41.0 31 37.00998779839567 39.0 35.0 41.0 31.0 41.0 32 37.013908016816465 39.0 35.0 41.0 31.0 41.0 33 36.79990274958925 39.0 35.0 41.0 31.0 41.0 34 36.78375374504687 39.0 35.0 41.0 31.0 41.0 35 36.72296921813086 39.0 35.0 41.0 31.0 41.0 36 36.65195829709094 39.0 35.0 41.0 31.0 41.0 37 36.61146346767179 39.0 35.0 41.0 31.0 41.0 38 36.412045762056636 39.0 35.0 40.0 30.0 41.0 39 36.37163247801295 39.0 35.0 40.0 30.0 41.0 40 36.305586764279504 39.0 35.0 40.0 30.0 41.0 41 36.22106951290229 39.0 35.0 40.0 30.0 41.0 42 36.118536773944136 38.0 35.0 40.0 30.0 41.0 43 35.978263627138304 38.0 35.0 40.0 29.0 41.0 44 35.92421716439548 38.0 35.0 40.0 29.0 41.0 45 35.75660215521407 38.0 35.0 40.0 29.0 41.0 46 35.605093867787765 38.0 34.0 40.0 28.0 41.0 47 35.48287849135015 38.0 34.0 40.0 28.0 41.0 48 35.36025236783609 38.0 34.0 40.0 28.0 41.0 49 35.17901626075191 38.0 34.0 40.0 27.0 41.0 50 35.01863160819561 37.0 34.0 40.0 26.0 41.0 51 33.79216499951677 36.0 32.0 39.0 23.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 2.0 11 1.0 12 6.0 13 8.0 14 10.0 15 25.0 16 38.0 17 64.0 18 152.0 19 301.0 20 534.0 21 782.0 22 1128.0 23 1480.0 24 1841.0 25 2103.0 26 2448.0 27 2987.0 28 3629.0 29 4645.0 30 6039.0 31 7737.0 32 10106.0 33 13816.0 34 21311.0 35 26730.0 36 30340.0 37 43802.0 38 66741.0 39 82269.0 40 28.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 21.60710834058181 32.5402290518991 19.76569295447956 26.086969653039528 2 24.37512080796366 30.578005702135886 19.274306562288587 25.772566927611866 3 20.808567700782834 32.286230308301924 20.25828742630714 26.6469145646081 4 21.336196482072097 31.825347926935343 19.38152363003769 27.45693196095487 5 18.00974920266744 33.4985382236397 17.222987339325407 31.26872523436745 6 19.6207233980864 38.68150188460424 19.3135691504784 22.384205566830964 7 85.32334251473857 5.763445926355466 4.932891176186334 3.9803203827196287 8 86.33631729003575 5.020476949840534 4.075456654102638 4.567749106021069 9 78.83293466705325 9.017710447472698 7.464120034792694 4.685234850681357 10 33.69696530395284 36.096815502077895 12.749468444959891 17.456750749009377 11 25.6448125060404 31.612423890982893 24.783753745046873 17.959009857929832 12 25.797634580071517 23.333756161206146 32.05699719725524 18.81161206146709 13 27.153401952256694 24.246762346573885 27.289008891466125 21.310826809703297 14 21.27881269933314 30.68975306852228 27.47897941432299 20.55245481782159 15 19.82247269740021 29.293213008601526 28.95797090944235 21.92634338455591 16 21.67929109886924 29.394691698076734 26.658693341065042 22.267323861988984 17 21.116628008118298 26.162172610418477 26.736916497535518 25.984282883927705 18 24.633951870107275 26.30412196772011 25.62397313230888 23.437953029863728 19 24.173069488740698 30.433036145742726 24.98882526336136 20.405069102155213 20 24.568111529912052 27.628177249444285 24.1857543249251 23.617956895718567 21 26.300799748719434 27.227698849908187 25.346114815888665 21.125386585483717 22 22.2881632357205 28.289298830578915 24.1229341838214 25.29960374987919 23 21.72972842369769 28.670749975838405 24.121726104184788 25.477795496279114 24 20.169795592925485 28.705784285300084 24.688919493573017 26.435500628201414 25 22.178227988789022 28.86706291678747 24.22864115202474 24.726067942398764 26 23.720643664830384 27.55418237170194 23.132610901710642 25.59256306175703 27 21.2549531265101 26.188146322605586 25.522494442833672 27.03440610805064 28 23.7472214168358 27.329177539383398 26.752017492993136 22.17158355078767 29 22.761428433362326 30.704854063979898 23.89883541123031 22.634882091427468 30 25.36725620952933 26.64600850488064 26.144051415869335 21.84268386972069 31 24.74690731613028 28.954950710350825 22.773509229728422 23.524632743790473 32 24.158270513192228 29.190526239489706 23.651481105634485 22.99972214168358 33 23.790712283753745 27.024741470957764 26.356371412003483 22.82817483328501 34 23.69376389291582 27.716971102735094 24.86469508069972 23.724569923649366 35 24.20327147965594 28.483799652073067 26.33130375954383 20.98162510872717 36 24.002126220160434 28.48832995071035 26.23224122934184 21.27730259978738 37 24.44005508843143 29.287172610418477 23.24617038755195 23.026601913598142 38 24.366664250507394 27.641768145356142 25.198729100222288 22.79283850391418 39 25.545145936020102 24.672308398569633 25.018121194549142 24.76442447086112 40 24.068268580264814 25.335242099159178 26.043780806030735 24.55270851454528 41 22.138965400599208 25.164600850488068 27.183301923262782 25.51313182564995 42 25.329201700976128 26.52580458103798 24.769256789407557 23.37573692857833 43 22.411689378563835 26.297175509809605 25.890958731999614 25.40017637962694 44 23.889774813955736 23.590171064076543 26.10086256886054 26.41919155310718 45 24.463612641345318 24.465726780709385 26.71215086498502 24.358509712960277 46 22.391756064559775 25.819984053348797 28.494068328984245 23.29419155310718 47 23.437046970136272 25.938073837827393 26.177575625785256 24.447303566251087 48 22.447629747752973 25.145573596211463 26.900611288296123 25.50618536773944 49 23.84537788731033 25.145875616120616 27.170919106987533 23.83782738958152 50 22.746327437904707 24.03444235043974 27.275115975645114 25.944114236010442 51 23.73755677974292 23.260667343191262 28.031977867981055 24.96979800908476 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 1778.0 1 1425.0 2 1072.0 3 741.0 4 410.0 5 372.0 6 334.0 7 356.5 8 379.0 9 429.0 10 479.0 11 496.5 12 514.0 13 657.5 14 801.0 15 713.5 16 626.0 17 674.0 18 722.0 19 762.0 20 802.0 21 901.5 22 1001.0 23 1325.5 24 1650.0 25 1713.5 26 1998.0 27 2219.0 28 2993.0 29 3767.0 30 4080.5 31 4394.0 32 5390.5 33 6387.0 34 6961.5 35 7536.0 36 8303.0 37 9070.0 38 9274.0 39 9478.0 40 11312.5 41 13147.0 42 14177.0 43 15207.0 44 18240.0 45 21273.0 46 24193.0 47 27113.0 48 29306.0 49 31499.0 50 29924.0 51 28349.0 52 26646.0 53 24943.0 54 22896.5 55 20850.0 56 18965.0 57 17080.0 58 17113.5 59 17147.0 60 16659.0 61 16171.0 62 14400.0 63 12629.0 64 10862.0 65 9095.0 66 7730.5 67 6366.0 68 5616.0 69 4866.0 70 4262.5 71 3659.0 72 3236.5 73 2814.0 74 2091.5 75 1213.0 76 1057.0 77 836.5 78 616.0 79 419.0 80 222.0 81 186.0 82 150.0 83 141.5 84 133.0 85 94.0 86 55.0 87 60.0 88 65.0 89 45.5 90 26.0 91 16.0 92 6.0 93 3.0 94 0.0 95 0.0 96 0.0 97 0.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 331104.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 30.49713726173667 #Duplication Level Percentage of deduplicated Percentage of total 1 78.35883321295772 23.897200921651017 2 8.735955948104607 5.3284329532366215 3 2.982864292123137 2.7290646525003686 4 1.4119076912776818 1.722365706471887 5 0.8189460132400923 1.2487754487867553 6 0.5889611656078899 1.077697770562574 7 0.44597059381065 0.9520578489899121 8 0.3819748135286506 0.9319310654967621 9 0.3239786376524746 0.8892378884122167 >10 4.86467923512122 36.249251905922804 >50 1.0009340008954455 19.839519391056758 >100 0.08299452754677519 4.217171042130467 >500 0.0 0.0 >1k 0.0019998681336572334 0.9172934047818673 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGCCGTCTTCTGCT 1530 0.46209046100318935 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1478 0.446385425727264 No Hit AAACTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGCCGTCTTCT 499 0.15070793466705326 No Hit AATCTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGCCGTCTTCT 456 0.13772107857349958 No Hit AATGATACGGCTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGCC 438 0.13228472020875615 No Hit AATGATACCTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGCCGT 425 0.1283584613897748 No Hit AGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT 390 0.11778776456944041 No Hit CCTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGCCGTCTTCTGC 366 0.11053928674978256 No Hit TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG 356 0.10751908765825842 No Hit AAAAACTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGCCGTCTT 347 0.10480090847588674 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.5212863631970619 0.0 2 0.0 0.0 0.0 0.7719628877935634 0.0 3 0.0 0.0 0.0 1.0289818304822653 0.0 4 0.0 0.0 0.0 2.227698849908186 0.0 5 0.0 0.0 0.0 2.4786773944138396 0.0 6 0.0 0.0 0.0 3.567761186817435 0.0 7 0.0 0.0 0.0 4.351502851067942 0.0 8 0.0 0.0 0.0 5.131318256499468 0.0 9 0.0 0.0 0.0 6.036169904320093 0.0 10 0.0 0.0 0.0 7.481033149705229 0.0 11 0.0 0.0 0.0 8.632937083212525 0.0 12 0.0 0.0 0.0 9.304629361167487 0.0 13 0.0 0.0 0.0 9.695443123610708 0.0 14 0.0 0.0 0.0 10.043370058954286 0.0 15 0.0 0.0 0.0 10.284985986276215 0.0 16 3.0201990915241134E-4 0.0 0.0 10.83164202184208 0.0 17 3.0201990915241134E-4 0.0 0.0 11.430547501691311 0.0 18 3.0201990915241134E-4 0.0 0.0 12.454697013627138 0.0 19 3.0201990915241134E-4 0.0 0.0 12.778764376147675 0.0 20 3.0201990915241134E-4 0.0 0.0 13.290990142070164 0.0 21 3.0201990915241134E-4 0.0 0.0 13.68844834251474 0.0 22 3.0201990915241134E-4 0.0 0.0 14.095269160143037 0.0 23 3.0201990915241134E-4 0.0 0.0 14.514774813955736 0.0 24 3.0201990915241134E-4 0.0 0.0 14.817398762926452 0.0 25 3.0201990915241134E-4 0.0 0.0 15.06022276988499 0.0 26 3.0201990915241134E-4 0.0 0.0 15.29428819947811 0.0 27 3.0201990915241134E-4 0.0 0.0 15.679363583647435 0.0 28 3.0201990915241134E-4 0.0 0.0 15.999806707258143 0.0 29 3.0201990915241134E-4 0.0 0.0 16.294276118681744 0.0 30 3.0201990915241134E-4 0.0 0.0 16.772675654779164 0.0 31 3.0201990915241134E-4 0.0 0.0 17.034828935923457 0.0 32 3.0201990915241134E-4 0.0 0.0 17.32476804870977 0.0 33 3.0201990915241134E-4 0.0 0.0 17.613499081859477 0.0 34 3.0201990915241134E-4 0.0 0.0 17.93061998646951 0.0 35 3.0201990915241134E-4 0.0 0.0 18.25045907026191 0.0 36 3.0201990915241134E-4 0.0 0.0 18.504759833768244 0.0 37 3.0201990915241134E-4 0.0 0.0 18.77718179182372 0.0 38 3.0201990915241134E-4 0.0 0.0 19.061382526336136 0.0 39 3.0201990915241134E-4 0.0 0.0 19.39753068522277 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CCCCTCG 25 3.8847695E-5 45.000004 1 CGAACTG 30 2.160803E-6 45.000004 1 TACCCGG 30 2.160803E-6 45.000004 2 CGTGCAC 30 2.160803E-6 45.000004 19 TATGGGA 200 0.0 45.000004 4 AATGCGA 50 2.1827873E-11 45.000004 31 GCTTCGC 30 2.160803E-6 45.000004 27 TCTCGTC 25 3.8847695E-5 45.000004 12 TATTCCG 30 2.160803E-6 45.000004 1 ACAATAT 30 2.160803E-6 45.000004 22 TTGGTAG 25 3.8847695E-5 45.000004 20 GACGCAT 25 3.8847695E-5 45.000004 34 ACTCACG 25 3.8847695E-5 45.000004 1 TCAACCG 25 3.8847695E-5 45.000004 1 TACCGAG 25 3.8847695E-5 45.000004 1 ATCCTAC 20 7.026005E-4 45.0 32 AAATCCG 20 7.026005E-4 45.0 40 CTCCGTC 20 7.026005E-4 45.0 15 CGAAATG 20 7.026005E-4 45.0 1 CGAAACG 20 7.026005E-4 45.0 1 >>END_MODULE