SRR3548391_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548391_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	335325
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGCCGTCTTCTGCT	1574	0.4693953627078208	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1491	0.4446432565421605	No Hit
AAACTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGCCGTCTTCT	586	0.17475583389249236	No Hit
AATCTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGCCGTCTTCT	500	0.1491090732871095	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGCC	482	0.14374114664877358	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGCCGT	479	0.1428464922090509	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	428	0.12763736673376574	No Hit
AAAAACTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGCCGTCTT	402	0.11988369492283606	No Hit
AGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATT	398	0.11869082233653917	No Hit
CCTGTCTCTTATACACATCTGACGCTAGGATCGTCGTATGCCGTCTTCTGC	347	0.103481696861254	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGCCTA	20	7.026131E-4	45.000004	35
AAATCCA	20	7.026131E-4	45.000004	9
CACGGTT	20	7.026131E-4	45.000004	32
CGAAATC	20	7.026131E-4	45.000004	24
ACGTTTC	20	7.026131E-4	45.000004	19
AGATAGT	20	7.026131E-4	45.000004	25
ATCAGCG	20	7.026131E-4	45.000004	1
GATCCTA	20	7.026131E-4	45.000004	37
CGACATG	20	7.026131E-4	45.000004	1
ATCGTGT	20	7.026131E-4	45.000004	14
TGCATCG	20	7.026131E-4	45.000004	11
TAGCACG	20	7.026131E-4	45.000004	1
TAACCGT	20	7.026131E-4	45.000004	44
AACGCAC	20	7.026131E-4	45.000004	25
TTGCGAA	20	7.026131E-4	45.000004	27
CGTACTC	20	7.026131E-4	45.000004	45
CGCAGGA	20	7.026131E-4	45.000004	41
CCCTTAC	20	7.026131E-4	45.000004	25
CGTACCC	20	7.026131E-4	45.000004	29
TTAACCG	20	7.026131E-4	45.000004	43