SRR3548390_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548390_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	659087
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	14611	2.216854527550991	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3876	0.588086246580497	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2717	0.4122369277500542	No Hit
CTGTCTCTTATACACATCTGACGCCGATTGGATCGTATGCCGTCTTCTGCT	2073	0.3145260033956064	Illumina Single End Adapter 2 (95% over 21bp)
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1726	0.2618774152729457	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCCGATTGGATCGTATGCCGT	702	0.10651097654786089	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGG	671	0.10180750037551947	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCCGATTGGATCGTATGCC	668	0.10135232526206708	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGATCGA	25	3.888987E-5	45.000004	23
GGGTGCG	30	2.1640863E-6	45.000004	7
ACCGGAC	30	2.1640863E-6	45.000004	19
GTATTGG	30	2.1640863E-6	45.000004	43
GTCGACC	30	2.1640863E-6	45.000004	31
CGAAACG	25	3.888987E-5	45.000004	1
GTGATCG	30	2.1640863E-6	45.000004	36
CACGACA	30	2.1640863E-6	45.000004	15
AATGCGG	25	3.888987E-5	45.000004	2
CTTATTG	25	3.888987E-5	45.000004	42
TATCTCG	30	2.1640863E-6	45.000004	1
GTTAACG	30	2.1640863E-6	45.000004	1
CGCTAGC	25	3.888987E-5	45.000004	22
CCGAGTT	25	3.888987E-5	45.000004	29
ACAATCT	25	3.888987E-5	45.000004	38
TATTACG	25	3.888987E-5	45.000004	1
GAACGTT	25	3.888987E-5	45.000004	31
CGAATCA	30	2.1640863E-6	45.000004	41
CCCTTAT	25	3.888987E-5	45.000004	12
TCATCCG	25	3.888987E-5	45.000004	1