SRR3548387_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548387_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	564504
Sequences flagged as poor quality	0
Sequence length	46
%GC	42

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	26528	4.699346683105877	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	6610	1.1709394441846293	No Hit
CTGTCTCTTATACACATCTGACGCACTCACCATCGTATGCCGTCTT	5606	0.9930841942661169	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	4700	0.8325893173476184	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCACTCACCATCGTAT	4671	0.8274520641129204	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCACTCACCATCGT	4620	0.8184175842863824	No Hit
AATCTGTCTCTTATACACATCTGACGCACTCACCATCGTATGCCGT	4455	0.789188384847583	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2484	0.44003231155137956	No Hit
AAACTGTCTCTTATACACATCTGACGCACTCACCATCGTATGCCGT	1223	0.21665036917364625	No Hit
AATGACTGTCTCTTATACACATCTGACGCACTCACCATCGTATGCC	1034	0.18316964981647607	No Hit
AACTGTCTCTTATACACATCTGACGCACTCACCATCGTATGCCGTC	934	0.16545498348993098	No Hit
AAAAACTGTCTCTTATACACATCTGACGCACTCACCATCGTATGCC	931	0.16492354350013463	No Hit
AATGATCTGTCTCTTATACACATCTGACGCACTCACCATCGTATGC	839	0.14862605047971317	No Hit
AGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	696	0.12329407763275371	No Hit
AATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCACTCA	621	0.11000807788784489	No Hit
CCTGTCTCTTATACACATCTGACGCACTCACCATCGTATGCCGTCT	606	0.10735087793886315	No Hit
ACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	597	0.10575655796947409	No Hit
AATGATACGGCGACTGTCTCTTATACACATCTGACGCACTCACCAT	588	0.10416223800008503	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGCGAGC	55	5.456968E-12	40.000004	17
GAGCGCG	55	5.456968E-12	40.000004	20
CTAGAGA	20	0.0012552262	40.0	14
AACGTAG	20	0.0012552262	40.0	20
CTAGACG	40	1.9254003E-8	40.0	1
AACCGCG	20	0.0012552262	40.0	1
TCGTTGA	90	0.0	40.0	24
AGCCGAC	25	7.789607E-5	40.0	38
CGAGTTT	30	4.863108E-6	40.0	32
CTACTAC	20	0.0012552262	40.0	11
AATCACG	30	4.863108E-6	40.0	1
CGAAACG	20	0.0012552262	40.0	1
CAACGAC	25	7.789607E-5	40.0	10
CAACGAA	25	7.789607E-5	40.0	12
AACCCGA	30	4.863108E-6	40.0	24
TCCGACA	20	0.0012552262	40.0	23
GCGCGAC	20	0.0012552262	40.0	9
CGTGATT	20	0.0012552262	40.0	40
ACCGCAA	20	0.0012552262	40.0	28
CGCATCG	25	7.789607E-5	40.0	1