SRR3548385_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548385_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	734165
Sequences flagged as poor quality	0
Sequence length	46
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	20856	2.840778299156184	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	5061	0.6893545728821178	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3904	0.5317605715336471	No Hit
CTGTCTCTTATACACATCTGACGCTCGATTGCTCGTATGCCGTCTT	3393	0.4621576893477624	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCTCGATTGCTCGTAT	3150	0.4290588627896999	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCTCGATTGCTCGT	2539	0.3458350643247771	No Hit
AATCTGTCTCTTATACACATCTGACGCTCGATTGCTCGTATGCCGT	2512	0.34215741692943685	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2083	0.2837236860923634	No Hit
AAACTGTCTCTTATACACATCTGACGCTCGATTGCTCGTATGCCGT	1109	0.15105596153453243	No Hit
ATGTTAGGGGGGGAGGGGAACTGGTATCTCCCAAGATTAACCTTCA	940	0.12803661302295807	No Hit
TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTT	797	0.10855870274393357	No Hit
AAAAACTGTCTCTTATACACATCTGACGCTCGATTGCTCGTATGCC	736	0.10024994381372034	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTCGTAG	30	4.8651073E-6	40.000004	1
TTTGTCG	30	4.8651073E-6	40.000004	14
GACGTAA	30	4.8651073E-6	40.000004	22
CGCATGA	30	4.8651073E-6	40.000004	13
ATAGCCG	30	4.8651073E-6	40.000004	1
CACGCGA	30	4.8651073E-6	40.000004	30
GTGATCC	30	4.8651073E-6	40.000004	22
CGATTAG	30	4.8651073E-6	40.000004	1
CGCGACG	30	4.8651073E-6	40.000004	32
ACCTCGA	30	4.8651073E-6	40.000004	17
GGCTTAA	30	4.8651073E-6	40.000004	25
TGCGCAT	30	4.8651073E-6	40.000004	11
TACCTCG	30	4.8651073E-6	40.000004	1
CGTAAAT	30	4.8651073E-6	40.000004	24
TCGAGGT	30	4.8651073E-6	40.000004	19
ATTGCAA	30	4.8651073E-6	40.000004	32
TTACCGG	60	0.0	40.000004	2
AGTACGA	30	4.8651073E-6	40.000004	33
TCAACGA	30	4.8651073E-6	40.000004	19
GTACGAC	30	4.8651073E-6	40.000004	34