##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR3548385_1.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 734165 Sequences flagged as poor quality 0 Sequence length 46 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.078451029400746 31.0 31.0 34.0 28.0 34.0 2 31.386907575272588 31.0 31.0 34.0 28.0 34.0 3 31.540917913548043 31.0 31.0 34.0 30.0 34.0 4 35.50754939284766 37.0 35.0 37.0 33.0 37.0 5 35.090367969053275 37.0 35.0 37.0 32.0 37.0 6 35.25265301396825 37.0 35.0 37.0 32.0 37.0 7 35.1645951523159 37.0 35.0 37.0 32.0 37.0 8 35.55802033602801 37.0 35.0 37.0 35.0 37.0 9 36.95304189112802 39.0 37.0 39.0 33.0 39.0 10 36.22786839470691 37.0 35.0 39.0 32.0 39.0 11 36.43976081671014 38.0 35.0 39.0 32.0 39.0 12 36.05557061423522 37.0 35.0 39.0 32.0 39.0 13 35.63035012565295 37.0 35.0 39.0 30.0 39.0 14 36.78448305217492 39.0 35.0 40.0 31.0 41.0 15 36.81230785994974 38.0 35.0 40.0 31.0 41.0 16 36.76967711617961 38.0 35.0 40.0 32.0 41.0 17 36.73446568550666 38.0 35.0 40.0 32.0 41.0 18 36.542021207766645 38.0 35.0 40.0 31.0 41.0 19 36.690115982102114 38.0 35.0 40.0 31.0 41.0 20 36.47707395476494 38.0 35.0 40.0 31.0 41.0 21 36.565503667431706 38.0 35.0 40.0 31.0 41.0 22 36.670375188138905 38.0 35.0 40.0 31.0 41.0 23 36.47395340284541 38.0 35.0 40.0 31.0 41.0 24 36.08908079246491 38.0 34.0 40.0 30.0 41.0 25 36.25018490393849 38.0 35.0 40.0 31.0 41.0 26 36.22978077135249 38.0 35.0 40.0 31.0 41.0 27 36.119486763874605 38.0 35.0 40.0 30.0 41.0 28 36.1326418448169 38.0 35.0 40.0 30.0 41.0 29 35.89434936288164 38.0 34.0 40.0 30.0 41.0 30 35.92618280631738 38.0 35.0 40.0 30.0 41.0 31 35.81502523274741 38.0 34.0 40.0 30.0 41.0 32 35.804018170302314 38.0 34.0 40.0 30.0 41.0 33 35.7769697547554 38.0 35.0 40.0 30.0 41.0 34 35.70682339800999 38.0 35.0 40.0 30.0 41.0 35 35.53575422418666 38.0 34.0 40.0 29.0 41.0 36 35.45339126763057 38.0 34.0 40.0 29.0 41.0 37 35.30027582355465 37.0 34.0 40.0 28.0 41.0 38 35.08875661465747 37.0 34.0 40.0 27.0 41.0 39 35.08136726757609 37.0 34.0 40.0 27.0 41.0 40 34.90000068104582 37.0 34.0 40.0 26.0 41.0 41 34.93607022944433 37.0 34.0 40.0 26.0 41.0 42 34.87480607220448 37.0 34.0 40.0 26.0 41.0 43 34.87022944433472 37.0 34.0 40.0 27.0 41.0 44 34.73721030013689 37.0 34.0 40.0 26.0 41.0 45 34.4911402750063 36.0 33.0 40.0 25.0 41.0 46 33.44517104465617 35.0 32.0 39.0 23.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 4.0 9 6.0 10 6.0 11 9.0 12 18.0 13 15.0 14 22.0 15 44.0 16 86.0 17 172.0 18 385.0 19 665.0 20 1190.0 21 2125.0 22 2871.0 23 4167.0 24 5473.0 25 6720.0 26 7808.0 27 9210.0 28 10851.0 29 13421.0 30 17641.0 31 23329.0 32 31633.0 33 44979.0 34 75140.0 35 81994.0 36 69973.0 37 95607.0 38 136152.0 39 92448.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 21.335667050322478 35.001259934755815 18.614889023584617 25.048183991337098 2 22.40572623320371 35.19958047577861 19.026921741025518 23.367771549992167 3 21.042544931997575 32.62018756001716 20.792601118277226 25.544666389708038 4 20.12790040386017 34.392132558757226 18.65575177242173 26.82421526496087 5 17.78728215047026 38.02401367539994 17.5757493206568 26.612954853472992 6 19.00281271921162 39.670782453535644 19.569034208931235 21.757370618321495 7 79.63237146962877 12.2656351092738 4.371769288920066 3.730224132177372 8 82.01535077264649 9.888785218581654 3.4687025396198403 4.62716146915203 9 77.60408082651719 12.90105085369093 5.551613057010345 3.9432552627815274 10 40.2592060367901 35.83758419428875 10.914985051044383 12.988224717876772 11 33.26622761913194 28.94185911886293 21.13012742367179 16.661785838333344 12 31.092601799323038 28.198974345004192 25.519603903754607 15.188819951918164 13 23.26084735720172 36.27222763275286 21.753420552600574 18.713504457444852 14 18.168531597120538 37.31368289144811 27.21254758807625 17.305237923355104 15 17.171889152983322 31.373056465508437 32.2855216470412 19.169532734467047 16 19.761906383442415 29.405515109001385 31.446473204252452 19.38610530330375 17 19.591781139117227 28.42440050942227 24.901078095523484 27.082740255937015 18 22.43936989641293 29.93101005904667 25.311340093848113 22.318279950692283 19 23.11823636376019 32.86509163471427 23.410677436271136 20.605994565254406 20 24.730135596221558 31.974147500902383 23.002594784551157 20.2931221183249 21 21.837052978553867 31.73918669508898 24.900397049709532 21.52336327664762 22 21.79060565404235 29.57577656248936 24.51601479231508 24.117602991153213 23 21.30869763608998 32.62018756001716 22.7598700564587 23.31124474743416 24 19.331894056513182 32.236622557599446 27.22358053026227 21.2079028556251 25 19.326445690001567 31.441297256066413 26.728187805193652 22.50406924873836 26 20.44771951809198 35.291113033173744 22.50379683041278 21.757370618321495 27 17.964762689586127 34.212200254711135 25.608003650405564 22.215033405297174 28 18.195773429678614 33.04761191285338 29.899409533279304 18.857205124188702 29 18.78065557470051 31.16792546634612 27.83815627277247 22.213262686180897 30 22.28109484925051 31.898687624716516 26.010774144776722 19.809443381256255 31 25.467572003568677 31.1285610182997 21.925452725204824 21.478414252926793 32 23.94025866120014 29.660634870907764 24.46575361124543 21.933352856646668 33 22.780710058365628 30.998208849509307 24.779579522314464 21.4415015698106 34 21.122091083067158 31.101727813229996 25.526141943568543 22.250039160134303 35 21.54842576260105 30.392078075092112 26.138265921148516 21.921230241158323 36 25.533497238359224 30.225085641511107 24.730135596221558 19.511281523908114 37 22.765454632133103 31.111943500439278 24.855584235151497 21.267017632276122 38 21.686814271996077 32.107223852948586 25.487730959661658 20.71823091539368 39 22.814626139900433 29.28646830072259 26.26208005012497 21.63682550925201 40 23.339167625806187 29.132960574257833 24.42420981659436 23.10366198334162 41 20.512555079580203 27.497769574959307 26.946394883983842 25.04328046147664 42 24.01176847166509 27.557429188261494 23.94434493608385 24.48645740398957 43 23.02833831631854 27.813774832632994 25.20577799268557 23.9521088583629 44 22.640142202365954 29.250917709234297 25.597243126545123 22.511696961854625 45 22.002955738832554 32.58354729522655 23.788113026363284 21.625383939577617 46 21.044315651113852 30.404881736394408 28.34975788821314 20.201044724278603 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 23806.0 1 18524.5 2 13243.0 3 8488.0 4 3733.0 5 3224.5 6 2716.0 7 2716.0 8 2726.5 9 2737.0 10 2677.5 11 2618.0 12 2647.5 13 2677.0 14 2730.5 15 2784.0 16 2819.0 17 2854.0 18 3105.5 19 3357.0 20 3357.0 21 3059.0 22 2761.0 23 2737.5 24 2714.0 25 4103.5 26 5493.0 27 4979.5 28 4466.0 29 6222.0 30 7978.0 31 7978.0 32 10805.5 33 13633.0 34 15396.0 35 17159.0 36 20540.0 37 23921.0 38 25273.0 39 26625.0 40 31836.5 41 37048.0 42 40179.0 43 43310.0 44 43310.0 45 52005.0 46 60700.0 47 65499.5 48 70299.0 49 65935.5 50 61572.0 51 57453.0 52 53334.0 53 48635.5 54 43937.0 55 41031.0 56 38125.0 57 38125.0 58 36064.0 59 34003.0 60 32777.0 61 31551.0 62 29724.5 63 27898.0 64 24592.0 65 21286.0 66 18584.0 67 15882.0 68 13373.0 69 10864.0 70 10864.0 71 9334.5 72 7805.0 73 6295.0 74 4785.0 75 4102.5 76 3420.0 77 2564.0 78 1708.0 79 1178.5 80 649.0 81 649.0 82 505.5 83 362.0 84 282.5 85 203.0 86 150.0 87 97.0 88 65.0 89 33.0 90 22.0 91 11.0 92 8.0 93 5.0 94 5.0 95 3.5 96 2.0 97 1.0 98 0.0 99 0.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 46 734165.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 18.70730373936342 #Duplication Level Percentage of deduplicated Percentage of total 1 77.63721122058573 14.523828917806112 2 9.539871951632023 3.5693056446762785 3 3.3291281011678566 1.8683703172739188 4 1.5615706974240644 1.1685110938880618 5 0.9558179271332482 0.8940388141205204 6 0.6001539967887487 0.6736357864992037 7 0.4221401294119713 0.552797253503875 8 0.3329383937489367 0.4982703726685707 9 0.24529867608152964 0.41299891562888064 >10 2.7660491127880973 12.247745498772383 >50 1.2446832860057166 17.225464990218274 >100 1.3534561948707324 39.5921301122172 >500 0.0051101366580879855 0.6810594766293925 >1k 0.0051101366580879855 2.5524366589539493 >5k 7.30019522583998E-4 0.691165432368429 >10k+ 7.30019522583998E-4 2.848240714774937 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 20856 2.840778299156184 No Hit CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 5061 0.6893545728821178 No Hit GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 3904 0.5317605715336471 No Hit CTGTCTCTTATACACATCTGACGCTCGATTGCTCGTATGCCGTCTT 3393 0.4621576893477624 No Hit AATGATACCTGTCTCTTATACACATCTGACGCTCGATTGCTCGTAT 3150 0.4290588627896999 No Hit AATGATACGGCTGTCTCTTATACACATCTGACGCTCGATTGCTCGT 2539 0.3458350643247771 No Hit AATCTGTCTCTTATACACATCTGACGCTCGATTGCTCGTATGCCGT 2512 0.34215741692943685 No Hit TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 2083 0.2837236860923634 No Hit AAACTGTCTCTTATACACATCTGACGCTCGATTGCTCGTATGCCGT 1109 0.15105596153453243 No Hit ATGTTAGGGGGGGAGGGGAACTGGTATCTCCCAAGATTAACCTTCA 940 0.12803661302295807 No Hit TGCAAAGGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTT 797 0.10855870274393357 No Hit AAAAACTGTCTCTTATACACATCTGACGCTCGATTGCTCGTATGCC 736 0.10024994381372034 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.5116016154406707 0.0 2 0.0 0.0 0.0 0.6687869893007703 0.0 3 0.0 0.0 0.0 0.9162790380908924 0.0 4 0.0 0.0 0.0 2.0662929995300785 0.0 5 0.0 0.0 0.0 2.2312422956692295 0.0 6 0.0 0.0 0.0 2.9309487649234165 0.0 7 0.0 0.0 0.0 3.423617306736224 0.0 8 0.0 0.0 0.0 3.670428309712394 0.0 9 0.0 0.0 0.0 4.549658455524303 0.0 10 0.0 0.0 0.0 5.352883888499179 0.0 11 0.0 0.0 0.0 6.512568700496482 0.0 12 0.0 0.0 0.0 6.945305210681522 0.0 13 0.0 0.0 0.0 7.136270456913636 0.0 14 0.0 0.0 0.0 7.368234661145655 0.0 15 0.0 0.0 0.0 7.522968270075528 0.0 16 0.0 0.0 0.0 7.804921237051617 0.0 17 0.0 0.0 0.0 8.139723359190373 0.0 18 0.0 0.0 0.0 8.658816478584514 0.0 19 0.0 0.0 0.0 8.85754564709568 0.0 20 0.0 0.0 0.0 9.055048933141732 0.0 21 0.0 0.0 0.0 9.29028215728072 0.0 22 0.0 0.0 0.0 9.527694728024354 0.0 23 0.0 0.0 0.0 9.752984683279644 0.0 24 0.0 0.0 0.0 9.911804567093228 0.0 25 1.362091627903809E-4 0.0 0.0 10.054824188023128 0.0 26 1.362091627903809E-4 0.0 0.0 10.192667860766994 0.0 27 1.362091627903809E-4 0.0 0.0 10.36660696165031 0.0 28 1.362091627903809E-4 0.0 0.0 10.51357664830113 0.0 29 1.362091627903809E-4 0.0 0.0 10.67416725123099 0.0 30 1.362091627903809E-4 0.0 0.0 10.89945720648628 0.0 31 1.362091627903809E-4 0.0 0.0 11.055008070392896 0.0 32 1.362091627903809E-4 0.0 0.0 11.21369174504369 0.0 33 1.362091627903809E-4 0.0 0.0 11.376189276252614 0.0 34 1.362091627903809E-4 0.0 0.0 11.532829813461552 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTCGTAG 30 4.8651073E-6 40.000004 1 TTTGTCG 30 4.8651073E-6 40.000004 14 GACGTAA 30 4.8651073E-6 40.000004 22 CGCATGA 30 4.8651073E-6 40.000004 13 ATAGCCG 30 4.8651073E-6 40.000004 1 CACGCGA 30 4.8651073E-6 40.000004 30 GTGATCC 30 4.8651073E-6 40.000004 22 CGATTAG 30 4.8651073E-6 40.000004 1 CGCGACG 30 4.8651073E-6 40.000004 32 ACCTCGA 30 4.8651073E-6 40.000004 17 GGCTTAA 30 4.8651073E-6 40.000004 25 TGCGCAT 30 4.8651073E-6 40.000004 11 TACCTCG 30 4.8651073E-6 40.000004 1 CGTAAAT 30 4.8651073E-6 40.000004 24 TCGAGGT 30 4.8651073E-6 40.000004 19 ATTGCAA 30 4.8651073E-6 40.000004 32 TTACCGG 60 0.0 40.000004 2 AGTACGA 30 4.8651073E-6 40.000004 33 TCAACGA 30 4.8651073E-6 40.000004 19 GTACGAC 30 4.8651073E-6 40.000004 34 >>END_MODULE