SRR3548382_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548382_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	912480
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	16073	1.7614632649482729	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3880	0.42521479922847627	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2960	0.3243906715763633	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1978	0.2167718744520428	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCGAGCTATGTCGTATGCC	1495	0.1638392074346835	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCGAGCTATGTCGTATGCCGT	1438	0.1575924951779765	No Hit
CTGTCTCTTATACACATCTGACGCGAGCTATGTCGTATGCCGTCTTCTGCT	1408	0.15430475188497284	RNA PCR Primer, Index 38 (96% over 26bp)
AATCTGTCTCTTATACACATCTGACGCGAGCTATGTCGTATGCCGTCTTCT	1255	0.13753726109065403	RNA PCR Primer, Index 27 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGACAA	20	7.03252E-4	45.000004	40
ACCGGTA	20	7.03252E-4	45.000004	4
GTCGACA	20	7.03252E-4	45.000004	20
CGAAACG	40	6.8121153E-9	45.000004	1
CACGCGT	20	7.03252E-4	45.000004	28
CCTACGT	20	7.03252E-4	45.000004	12
TGCGGTC	40	6.8121153E-9	45.000004	20
TGACGTA	20	7.03252E-4	45.000004	39
CGACAAG	75	0.0	45.000004	1
TAGTTCG	20	7.03252E-4	45.000004	18
ATCCGAA	20	7.03252E-4	45.000004	12
TCAATCG	20	7.03252E-4	45.000004	2
TCGGACG	35	1.2115561E-7	45.000004	1
ACTACCG	20	7.03252E-4	45.000004	1
GATTGCG	20	7.03252E-4	45.000004	1
GTAAGTA	35	1.2115561E-7	45.000004	43
TCGACAT	20	7.03252E-4	45.000004	21
CGTTTCA	35	1.2115561E-7	45.000004	22
CGATAGA	20	7.03252E-4	45.000004	11
CTAATCG	20	7.03252E-4	45.000004	27