SRR3548381_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548381_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	979260
Sequences flagged as poor quality	0
Sequence length	46
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	19879	2.0300022465943672	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	4911	0.5015011335089761	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3674	0.37518125931826074	No Hit
CTGTCTCTTATACACATCTGACGCGAGCTATGTCGTATGCCGTCTT	2456	0.2508016257173784	RNA PCR Primer, Index 38 (95% over 21bp)
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2263	0.23109286604170495	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCGAGCTATGTCGTAT	1255	0.1281579968547679	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCGAGCTATGTCGT	1141	0.11651655331576904	No Hit
AATCTGTCTCTTATACACATCTGACGCGAGCTATGTCGTATGCCGT	1054	0.10763229377284889	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGTTAT	20	0.0012556775	40.000004	39
TCGTTAC	20	0.0012556775	40.000004	32
ACGTTCC	20	0.0012556775	40.000004	14
CTATCCG	20	0.0012556775	40.000004	1
CGGCATG	40	1.927765E-8	40.000004	1
GACCGTC	20	0.0012556775	40.000004	25
GACGTAA	20	0.0012556775	40.000004	28
TAGCGGT	40	1.927765E-8	40.000004	22
ATAGCGG	40	1.927765E-8	40.000004	2
TCCTCGA	20	0.0012556775	40.000004	24
ATAGACG	20	0.0012556775	40.000004	1
TATGCGA	20	0.0012556775	40.000004	39
CGTTACA	20	0.0012556775	40.000004	33
ACTAGTA	40	1.927765E-8	40.000004	27
CTAACGC	20	0.0012556775	40.000004	28
TAACCGA	20	0.0012556775	40.000004	26
CGTAGTT	20	0.0012556775	40.000004	26
CGTAGAC	20	0.0012556775	40.000004	13
CTACGAC	20	0.0012556775	40.000004	37
CGCTAGA	40	1.927765E-8	40.000004	12