SRR3548380_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548380_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	246927
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	6083	2.4634811098016822	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1428	0.5783085689292787	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1156	0.4681545557998923	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	718	0.29077419642242447	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCTTACGCGTTCGTATGCCGT	458	0.1854799191663933	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCTTACGCGTTCGTATGCC	410	0.16604097567297216	No Hit
CTGTCTCTTATACACATCTGACGCTTACGCGTTCGTATGCCGTCTTCTGCT	288	0.1166336609605268	Illumina Single End Adapter 2 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TAATAGG	30	2.1585565E-6	45.000004	2
GGTACGA	30	2.1585565E-6	45.000004	9
TATGGGC	70	0.0	45.000004	4
TTACTCG	30	2.1585565E-6	45.000004	1
TCGATCA	35	1.206754E-7	45.000004	17
CACTACG	35	1.206754E-7	45.000004	1
CTCGATC	35	1.206754E-7	45.000004	16
TTCCTCG	35	1.206754E-7	45.000004	12
TAATCAG	20	7.0225174E-4	45.0	1
CGGGTAT	25	3.8818813E-5	45.0	6
CTAGAAC	20	7.0225174E-4	45.0	20
GTCGCTA	20	7.0225174E-4	45.0	33
TCGCATG	20	7.0225174E-4	45.0	42
GTCGCAT	20	7.0225174E-4	45.0	41
GATAATC	20	7.0225174E-4	45.0	9
CTCGTCC	20	7.0225174E-4	45.0	37
TACTTGA	20	7.0225174E-4	45.0	42
GTCGAGG	20	7.0225174E-4	45.0	2
CCCTAGC	75	0.0	45.0	21
GCAACCT	25	3.8818813E-5	45.0	37