SRR3548378_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548378_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1047617
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	16360	1.5616394159315856	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3837	0.36625980678053144	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	3399	0.3244506341535122	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2234	0.2132458713442031	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCCCATTAGCTCGTATGCCGT	2081	0.19864129734435393	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCCCATTAGCTCGTATGCC	2035	0.19425037967119663	No Hit
CTGTCTCTTATACACATCTGACGCCCATTAGCTCGTATGCCGTCTTCTGCT	2015	0.19234128503069348	Illumina PCR Primer Index 10 (95% over 24bp)
AATCTGTCTCTTATACACATCTGACGCCCATTAGCTCGTATGCCGTCTTCT	1961	0.18718672950133494	Illumina PCR Primer Index 10 (95% over 21bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACACGTC	20	7.0329994E-4	45.000004	23
TAGCGTA	20	7.0329994E-4	45.000004	34
ATTCGGA	20	7.0329994E-4	45.000004	33
TCGATTG	20	7.0329994E-4	45.000004	1
TACGGGT	150	0.0	45.000004	4
ACGGGTA	150	0.0	45.000004	5
TCGCTTA	20	7.0329994E-4	45.000004	27
TCGCTAG	20	7.0329994E-4	45.000004	14
GAACGAT	20	7.0329994E-4	45.000004	34
GAACGAC	20	7.0329994E-4	45.000004	17
CCGGTAT	20	7.0329994E-4	45.000004	37
CACGTAT	20	7.0329994E-4	45.000004	39
CGACTAT	20	7.0329994E-4	45.000004	21
CTCTCGT	20	7.0329994E-4	45.000004	29
CAATACG	75	0.0	45.000004	1
TAGTACG	40	6.8139343E-9	45.000004	1
TAATCGC	20	7.0329994E-4	45.000004	15
TAATCCG	20	7.0329994E-4	45.000004	1
TCACGGT	25	3.8905684E-5	45.0	40
CGTGGTA	45	3.8562575E-10	45.0	26