SRR3548377_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548377_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1127437
Sequences flagged as poor quality	0
Sequence length	46
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	21290	1.8883538503703532	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	5344	0.47399544276088157	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	4345	0.38538738749925716	No Hit
CTGTCTCTTATACACATCTGACGCCCATTAGCTCGTATGCCGTCTT	3745	0.33216933629107437	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2953	0.26192150869627306	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCCCATTAGCTCGTAT	2079	0.18440054743635342	No Hit
AATCTGTCTCTTATACACATCTGACGCCCATTAGCTCGTATGCCGT	1730	0.15344538098359375	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCCCATTAGCTCGT	1706	0.15131665893526647	No Hit
AAACTGTCTCTTATACACATCTGACGCCCATTAGCTCGTATGCCGT	1198	0.10625870891233834	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGCCCA	45	1.2223609E-9	40.0	19
TGCCCGT	20	0.0012557585	40.0	32
CGTATCT	20	0.0012557585	40.0	31
GTCGACA	35	3.0563024E-7	40.0	22
ACGTTAG	35	3.0563024E-7	40.0	1
CCGGCAT	25	7.7945595E-5	40.0	30
TAGCGTA	25	7.7945595E-5	40.0	34
ATTACGA	35	3.0563024E-7	40.0	19
GCTATCG	25	7.7945595E-5	40.0	1
ATAGCGT	20	0.0012557585	40.0	15
CGTCTCC	35	3.0563024E-7	40.0	35
CGTCTAC	20	0.0012557585	40.0	39
TGCGGTC	40	1.9283107E-8	40.0	28
TACGGGT	115	0.0	40.0	4
AGGAACG	25	7.7945595E-5	40.0	1
CGCGACT	35	3.0563024E-7	40.0	27
TGTGCGA	25	7.7945595E-5	40.0	33
TCTAGCG	20	0.0012557585	40.0	1
TAGTTTC	30	4.867432E-6	40.0	23
CGTTAGA	20	0.0012557585	40.0	5