SRR3548376_1.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR3548376_1.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	454712
Sequences flagged as poor quality	0
Sequence length	51
%GC	38

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	20555	4.520443709424867	No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	4927	1.0835429898485194	No Hit
GAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	4161	0.915084712961171	No Hit
AATGATACGGCTGTCTCTTATACACATCTGACGCAATCGCTGTCGTATGCC	3021	0.6643765724238639	No Hit
AATGATACCTGTCTCTTATACACATCTGACGCAATCGCTGTCGTATGCCGT	2834	0.6232516405988845	No Hit
TAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2461	0.5412216963704499	No Hit
AATCTGTCTCTTATACACATCTGACGCAATCGCTGTCGTATGCCGTCTTCT	2201	0.48404264677422193	No Hit
CTGTCTCTTATACACATCTGACGCAATCGCTGTCGTATGCCGTCTTCTGCT	2169	0.47700522528545547	TruSeq Adapter, Index 16 (95% over 22bp)
AATGACTGTCTCTTATACACATCTGACGCAATCGCTGTCGTATGCCGTCTT	620	0.13635004134485126	No Hit
AGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	609	0.13393092770808776	No Hit
AATGATCTGTCTCTTATACACATCTGACGCAATCGCTGTCGTATGCCGTCT	488	0.10732067770368937	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCACGGC	20	7.028783E-4	45.000004	19
TCACGCG	20	7.028783E-4	45.000004	1
TATTTCG	20	7.028783E-4	45.000004	27
AGACTCG	20	7.028783E-4	45.000004	1
GTACCAC	20	7.028783E-4	45.000004	23
CGTATAA	20	7.028783E-4	45.000004	20
GGTCGGT	20	7.028783E-4	45.000004	12
CAAGTAC	20	7.028783E-4	45.000004	24
CTCCGAG	20	7.028783E-4	45.000004	30
GGTCGAG	20	7.028783E-4	45.000004	18
CACGGCC	20	7.028783E-4	45.000004	20
AGATACG	20	7.028783E-4	45.000004	1
CGAAACG	20	7.028783E-4	45.000004	14
TCCGATC	20	7.028783E-4	45.000004	14
TAGACGA	20	7.028783E-4	45.000004	12
GCGCGAC	20	7.028783E-4	45.000004	9
CCGGCTA	20	7.028783E-4	45.000004	30
ACCGCAA	20	7.028783E-4	45.000004	29
GACAATC	20	7.028783E-4	45.000004	45
CGGTTCG	20	7.028783E-4	45.000004	15